src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  * The Jalview Authors are detailed in the 'AUTHORS' file.
  18  */
  19 package jalview.jbgui;
  20
  21 import jalview.util.MessageManager;
  22
  23 import java.awt.*;
  24 import java.awt.event.*;
  25
  26 import javax.swing.*;
  27 import javax.swing.event.*;
  28
  29 public class GPCAPanel extends JInternalFrame
  30 {
  31   JPanel jPanel2 = new JPanel();
  32
  33   JLabel jLabel1 = new JLabel();
  34
  35   JLabel jLabel2 = new JLabel();
  36
  37   JLabel jLabel3 = new JLabel();
  38
  39   protected JComboBox xCombobox = new JComboBox();
  40
  41   protected JComboBox yCombobox = new JComboBox();
  42
  43   protected JComboBox zCombobox = new JComboBox();
  44
  45   protected JButton resetButton = new JButton();
  46
  47   FlowLayout flowLayout1 = new FlowLayout();
  48
  49   BorderLayout borderLayout1 = new BorderLayout();
  50
  51   JMenuBar jMenuBar1 = new JMenuBar();
  52
  53   JMenu fileMenu = new JMenu();
  54
  55   JMenu saveMenu = new JMenu();
  56
  57   JMenuItem eps = new JMenuItem();
  58
  59   JMenuItem png = new JMenuItem();
  60
  61   JMenuItem print = new JMenuItem();
  62
  63   JMenuItem outputValues = new JMenuItem();
  64
  65   JMenuItem outputPoints = new JMenuItem();
  66
  67   JMenuItem outputProjPoints = new JMenuItem();
  68
  69   protected JMenu viewMenu = new JMenu();
  70
  71   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  72
  73   JMenuItem bgcolour = new JMenuItem();
  74
  75   JMenuItem originalSeqData = new JMenuItem();
  76
  77   protected JMenu associateViewsMenu = new JMenu();
  78
  79   protected JMenu calcSettings = new JMenu();
  80
  81   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  82
  83   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
  84
  85   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
  86
  87   protected JLabel statusBar = new JLabel();
  88
  89   protected GridLayout statusPanelLayout = new GridLayout();
  90
  91   protected JPanel statusPanel = new JPanel();
  92
  93   public GPCAPanel()
  94   {
  95     try
  96     {
  97       jbInit();
  98     } catch (Exception e)
  99     {
 100       e.printStackTrace();
 101     }
 102
 103     for (int i = 1; i < 8; i++)
 104     {
 105       xCombobox.addItem("dim " + i);
 106       yCombobox.addItem("dim " + i);
 107       zCombobox.addItem("dim " + i);
 108     }
 109
 110     setJMenuBar(jMenuBar1);
 111   }
 112
 113   private void jbInit() throws Exception
 114   {
 115     this.getContentPane().setLayout(borderLayout1);
 116     jPanel2.setLayout(flowLayout1);
 117     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
 118     jLabel1.setText("x=");
 119     jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
 120     jLabel2.setText("y=");
 121     jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
 122     jLabel3.setText("z=");
 123     jPanel2.setBackground(Color.white);
 124     jPanel2.setBorder(null);
 125     zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 126     zCombobox.addActionListener(new java.awt.event.ActionListener()
 127     {
 128       public void actionPerformed(ActionEvent e)
 129       {
 130         zCombobox_actionPerformed(e);
 131       }
 132     });
 133     yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 134     yCombobox.addActionListener(new java.awt.event.ActionListener()
 135     {
 136       public void actionPerformed(ActionEvent e)
 137       {
 138         yCombobox_actionPerformed(e);
 139       }
 140     });
 141     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 142     xCombobox.addActionListener(new java.awt.event.ActionListener()
 143     {
 144       public void actionPerformed(ActionEvent e)
 145       {
 146         xCombobox_actionPerformed(e);
 147       }
 148     });
 149     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
 150     resetButton.setText(MessageManager.getString("action.reset"));
 151     resetButton.addActionListener(new java.awt.event.ActionListener()
 152     {
 153       @Override
 154       public void actionPerformed(ActionEvent e)
 155       {
 156         resetButton_actionPerformed(e);
 157       }
 158     });
 159     fileMenu.setText(MessageManager.getString("action.file"));
 160     saveMenu.setText(MessageManager.getString("action.save_as"));
 161     eps.setText("EPS");
 162     eps.addActionListener(new ActionListener()
 163     {
 164       public void actionPerformed(ActionEvent e)
 165       {
 166         eps_actionPerformed(e);
 167       }
 168     });
 169     png.setText("PNG");
 170     png.addActionListener(new ActionListener()
 171     {
 172       public void actionPerformed(ActionEvent e)
 173       {
 174         png_actionPerformed(e);
 175       }
 176     });
 177     outputValues.setText(MessageManager.getString("label.output_values"));
 178     outputValues.addActionListener(new ActionListener()
 179     {
 180       public void actionPerformed(ActionEvent e)
 181       {
 182         outputValues_actionPerformed(e);
 183       }
 184     });
 185     outputPoints.setText(MessageManager.getString("label.output_points"));
 186     outputPoints.addActionListener(new ActionListener()
 187     {
 188       public void actionPerformed(ActionEvent e)
 189       {
 190         outputPoints_actionPerformed(e);
 191       }
 192     });
 193     outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
 194     outputProjPoints.addActionListener(new ActionListener()
 195     {
 196       public void actionPerformed(ActionEvent e)
 197       {
 198         outputProjPoints_actionPerformed(e);
 199       }
 200     });
 201     print.addActionListener(new ActionListener()
 202     {
 203       public void actionPerformed(ActionEvent e)
 204       {
 205         print_actionPerformed(e);
 206       }
 207     });
 208     viewMenu.setText(MessageManager.getString("action.view"));
 209     viewMenu.addMenuListener(new MenuListener()
 210     {
 211       public void menuSelected(MenuEvent e)
 212       {
 213         viewMenu_menuSelected();
 214       }
 215
 216       public void menuDeselected(MenuEvent e)
 217       {
 218       }
 219
 220       public void menuCanceled(MenuEvent e)
 221       {
 222       }
 223     });
 224     showLabels.setText(MessageManager.getString("label.show_labels"));
 225     showLabels.addActionListener(new ActionListener()
 226     {
 227       public void actionPerformed(ActionEvent e)
 228       {
 229         showLabels_actionPerformed(e);
 230       }
 231     });
 232     print.setText(MessageManager.getString("action.print"));
 233     bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
 234     bgcolour.addActionListener(new ActionListener()
 235     {
 236       public void actionPerformed(ActionEvent e)
 237       {
 238         bgcolour_actionPerformed(e);
 239       }
 240     });
 241     originalSeqData.setText(MessageManager.getString("label.input_data"));
 242     originalSeqData.addActionListener(new ActionListener()
 243     {
 244       public void actionPerformed(ActionEvent e)
 245       {
 246         originalSeqData_actionPerformed(e);
 247       }
 248     });
 249     associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
 250     calcSettings.setText(MessageManager.getString("action.change_params"));
 251     nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
 252     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 253     nuclSetting.addActionListener(new ActionListener()
 254     {
 255
 256       @Override
 257       public void actionPerformed(ActionEvent arg0)
 258       {
 259         nuclSetting_actionPerfomed(arg0);
 260       }
 261     });
 262     protSetting.addActionListener(new ActionListener()
 263     {
 264
 265       @Override
 266       public void actionPerformed(ActionEvent arg0)
 267       {
 268         protSetting_actionPerfomed(arg0);
 269       }
 270     });
 271     jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
 272     jvVersionSetting.addActionListener(new ActionListener()
 273     {
 274       @Override
 275       public void actionPerformed(ActionEvent arg0)
 276       {
 277         jvVersionSetting_actionPerfomed(arg0);
 278       }
 279     });
 280     calcSettings.add(jvVersionSetting);
 281     calcSettings.add(nuclSetting);
 282     calcSettings.add(protSetting);
 283     statusPanel.setLayout(statusPanelLayout);
 284     statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
 285     // statusPanel.setBackground(Color.lightGray);
 286     // statusBar.setBackground(Color.lightGray);
 287     // statusPanel.add(statusBar, null);
 288     JPanel panelBar = new JPanel(new BorderLayout());
 289     panelBar.add(jPanel2, BorderLayout.NORTH);
 290     panelBar.add(statusPanel, BorderLayout.SOUTH);
 291     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 292     jPanel2.add(jLabel1, null);
 293     jPanel2.add(xCombobox, null);
 294     jPanel2.add(jLabel2, null);
 295     jPanel2.add(yCombobox, null);
 296     jPanel2.add(jLabel3, null);
 297     jPanel2.add(zCombobox, null);
 298     jPanel2.add(resetButton, null);
 299     jMenuBar1.add(fileMenu);
 300     jMenuBar1.add(viewMenu);
 301     jMenuBar1.add(calcSettings);
 302     fileMenu.add(saveMenu);
 303     fileMenu.add(outputValues);
 304     fileMenu.add(print);
 305     fileMenu.add(originalSeqData);
 306     fileMenu.add(outputPoints);
 307     fileMenu.add(outputProjPoints);
 308     saveMenu.add(eps);
 309     saveMenu.add(png);
 310     viewMenu.add(showLabels);
 311     viewMenu.add(bgcolour);
 312     viewMenu.add(associateViewsMenu);
 313   }
 314
 315   protected void resetButton_actionPerformed(ActionEvent e)
 316   {
 317     // TODO Auto-generated method stub
 318
 319   }
 320
 321   protected void protSetting_actionPerfomed(ActionEvent arg0)
 322   {
 323     // TODO Auto-generated method stub
 324
 325   }
 326
 327   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 328   {
 329     // TODO Auto-generated method stub
 330
 331   }
 332
 333   protected void outputPoints_actionPerformed(ActionEvent e)
 334   {
 335     // TODO Auto-generated method stub
 336
 337   }
 338
 339   protected void outputProjPoints_actionPerformed(ActionEvent e)
 340   {
 341     // TODO Auto-generated method stub
 342
 343   }
 344
 345   protected void xCombobox_actionPerformed(ActionEvent e)
 346   {
 347   }
 348
 349   protected void yCombobox_actionPerformed(ActionEvent e)
 350   {
 351   }
 352
 353   protected void zCombobox_actionPerformed(ActionEvent e)
 354   {
 355   }
 356
 357   public void eps_actionPerformed(ActionEvent e)
 358   {
 359
 360   }
 361
 362   public void png_actionPerformed(ActionEvent e)
 363   {
 364
 365   }
 366
 367   public void outputValues_actionPerformed(ActionEvent e)
 368   {
 369
 370   }
 371
 372   public void print_actionPerformed(ActionEvent e)
 373   {
 374
 375   }
 376
 377   public void showLabels_actionPerformed(ActionEvent e)
 378   {
 379
 380   }
 381
 382   public void bgcolour_actionPerformed(ActionEvent e)
 383   {
 384
 385   }
 386
 387   public void originalSeqData_actionPerformed(ActionEvent e)
 388   {
 389
 390   }
 391
 392   public void viewMenu_menuSelected()
 393   {
 394
 395   }
 396
 397   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 398   {
 399     // TODO Auto-generated method stub
 400
 401   }
 402 }