src/jalview/jbgui/GPreferences.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.gui.JvSwingUtils;
  24 import jalview.gui.StructureViewer.Viewer;
  25 import jalview.util.MessageManager;
  26
  27 import java.awt.BorderLayout;
  28 import java.awt.Color;
  29 import java.awt.Dimension;
  30 import java.awt.FlowLayout;
  31 import java.awt.Font;
  32 import java.awt.GridBagConstraints;
  33 import java.awt.GridBagLayout;
  34 import java.awt.GridLayout;
  35 import java.awt.Insets;
  36 import java.awt.Rectangle;
  37 import java.awt.event.ActionEvent;
  38 import java.awt.event.ActionListener;
  39 import java.awt.event.KeyEvent;
  40 import java.awt.event.MouseAdapter;
  41 import java.awt.event.MouseEvent;
  42
  43 import javax.swing.BorderFactory;
  44 import javax.swing.DefaultListCellRenderer;
  45 import javax.swing.JButton;
  46 import javax.swing.JCheckBox;
  47 import javax.swing.JComboBox;
  48 import javax.swing.JLabel;
  49 import javax.swing.JList;
  50 import javax.swing.JPanel;
  51 import javax.swing.JScrollPane;
  52 import javax.swing.JTabbedPane;
  53 import javax.swing.JTextField;
  54 import javax.swing.ListSelectionModel;
  55 import javax.swing.SwingConstants;
  56 import javax.swing.border.Border;
  57 import javax.swing.border.EmptyBorder;
  58 import javax.swing.border.TitledBorder;
  59 import javax.swing.event.ListSelectionEvent;
  60 import javax.swing.event.ListSelectionListener;
  61
  62 /**
  63  * Base class for the Preferences panel.
  64  *
  65  * @author $author$
  66  * @version $Revision$
  67  */
  68 public class GPreferences extends JPanel
  69 {
  70   private static final Font verdana11 = JvSwingUtils.getLabelFont();
  71
  72   /*
  73    * Visual tab components
  74    */
  75   protected JCheckBox fullScreen = new JCheckBox();
  76
  77   protected JCheckBox openoverv = new JCheckBox();
  78
  79   protected JCheckBox seqLimit = new JCheckBox();
  80
  81   protected JCheckBox rightAlign = new JCheckBox();
  82
  83   protected JComboBox<String> fontSizeCB = new JComboBox<String>();
  84
  85   protected JComboBox<String> fontStyleCB = new JComboBox<String>();
  86
  87   protected JComboBox<String> fontNameCB = new JComboBox<String>();
  88
  89   protected JCheckBox showUnconserved = new JCheckBox();
  90
  91   protected JCheckBox idItalics = new JCheckBox();
  92
  93   protected JCheckBox smoothFont = new JCheckBox();
  94
  95   protected JComboBox<String> gapSymbolCB = new JComboBox<String>();
  96
  97   protected JCheckBox wrap = new JCheckBox();
  98
  99   protected JComboBox<String> sortby = new JComboBox<String>();
 100
 101   protected JComboBox<String> sortAnnBy = new JComboBox<String>();
 102
 103   protected JComboBox<String> sortAutocalc = new JComboBox<String>();
 104
 105   protected JCheckBox startupCheckbox = new JCheckBox();
 106
 107   protected JTextField startupFileTextfield = new JTextField();
 108
 109   // below are in the 'second column'
 110   protected JCheckBox annotations = new JCheckBox();
 111
 112   protected JCheckBox quality = new JCheckBox();
 113
 114   protected JCheckBox conservation = new JCheckBox();
 115
 116   protected JCheckBox identity = new JCheckBox();
 117
 118   protected JCheckBox showGroupConsensus = new JCheckBox();
 119
 120   protected JCheckBox showGroupConservation = new JCheckBox();
 121
 122   protected JCheckBox showConsensHistogram = new JCheckBox();
 123
 124   protected JCheckBox showConsensLogo = new JCheckBox();
 125
 126   protected JCheckBox showDbRefTooltip = new JCheckBox();
 127
 128   protected JCheckBox showNpTooltip = new JCheckBox();
 129
 130   /*
 131    * Annotations tab components
 132    */
 133   protected JCheckBox structFromPdb = new JCheckBox();
 134
 135   protected JCheckBox useRnaView = new JCheckBox();
 136
 137   protected JCheckBox addSecondaryStructure = new JCheckBox();
 138
 139   protected JCheckBox addTempFactor = new JCheckBox();
 140
 141   protected JComboBox<String> structViewer = new JComboBox<String>();
 142
 143   /*
 144    * Colours tab components
 145    */
 146   protected JPanel minColour = new JPanel();
 147
 148   protected JPanel maxColour = new JPanel();
 149
 150   protected JComboBox<String> colour = new JComboBox<String>();
 151
 152   /*
 153    * Connections tab components
 154    */
 155   protected JList linkURLList = new JList();
 156
 157   protected JTextField proxyServerTB = new JTextField();
 158
 159   protected JTextField proxyPortTB = new JTextField();
 160
 161   protected JTextField defaultBrowser = new JTextField();
 162
 163   protected JList linkNameList = new JList();
 164
 165   protected JCheckBox useProxy = new JCheckBox();
 166
 167   protected JCheckBox usagestats = new JCheckBox();
 168
 169   protected JCheckBox questionnaire = new JCheckBox();
 170
 171   protected JCheckBox versioncheck = new JCheckBox();
 172
 173   /*
 174    * Output tab components
 175    */
 176   protected JComboBox<String> epsRendering = new JComboBox<String>();
 177
 178   protected JLabel userIdWidthlabel = new JLabel();
 179
 180   protected JCheckBox autoIdWidth = new JCheckBox();
 181
 182   protected JTextField userIdWidth = new JTextField();
 183
 184   protected JCheckBox blcjv = new JCheckBox();
 185
 186   protected JCheckBox pileupjv = new JCheckBox();
 187
 188   protected JCheckBox clustaljv = new JCheckBox();
 189
 190   protected JCheckBox msfjv = new JCheckBox();
 191
 192   protected JCheckBox fastajv = new JCheckBox();
 193
 194   protected JCheckBox pfamjv = new JCheckBox();
 195
 196   protected JCheckBox pirjv = new JCheckBox();
 197
 198   protected JCheckBox modellerOutput = new JCheckBox();
 199
 200   /*
 201    * Editing tab components
 202    */
 203   protected JCheckBox autoCalculateConsCheck = new JCheckBox();
 204
 205   protected JCheckBox padGaps = new JCheckBox();
 206
 207   protected JCheckBox sortByTree = new JCheckBox();
 208
 209   /*
 210    * DAS Settings tab
 211    */
 212   protected JPanel dasTab = new JPanel();
 213
 214   /*
 215    * Web Services tab
 216    */
 217   protected JPanel wsTab = new JPanel();
 218
 219   /**
 220    * Creates a new GPreferences object.
 221    */
 222   public GPreferences()
 223   {
 224     try
 225     {
 226       jbInit();
 227     } catch (Exception ex)
 228     {
 229       ex.printStackTrace();
 230     }
 231   }
 232
 233   /**
 234    * Construct the panel and its tabbed sub-panels.
 235    *
 236    * @throws Exception
 237    */
 238   private void jbInit() throws Exception
 239   {
 240     JTabbedPane tabbedPane = new JTabbedPane();
 241     this.setLayout(new BorderLayout());
 242     JPanel okCancelPanel = initOkCancelPanel();
 243     this.add(tabbedPane, BorderLayout.CENTER);
 244     this.add(okCancelPanel, BorderLayout.SOUTH);
 245
 246     tabbedPane.add(initVisualTab(),
 247             MessageManager.getString("label.visual"));
 248
 249     tabbedPane.add(initColoursTab(),
 250             MessageManager.getString("label.colours"));
 251
 252     tabbedPane.add(initStructureTab(),
 253             MessageManager.getString("label.structure"));
 254
 255     tabbedPane.add(initConnectionsTab(),
 256             MessageManager.getString("label.connections"));
 257
 258     tabbedPane.add(initOutputTab(), MessageManager.getString("label.output"));
 259
 260     tabbedPane.add(initEditingTab(), MessageManager.getString("label.editing"));
 261
 262     /*
 263      * See DasSourceBrowser for the real work of configuring this tab.
 264      */
 265     dasTab.setLayout(new BorderLayout());
 266     tabbedPane
 267             .add(dasTab, MessageManager.getString("label.das_settings"));
 268
 269     /*
 270      * See WsPreferences for the real work of configuring this tab.
 271      */
 272     wsTab.setLayout(new BorderLayout());
 273     tabbedPane.add(wsTab, MessageManager.getString("label.web_services"));
 274   }
 275
 276   /**
 277    * Initialises the Editing tabbed panel.
 278    *
 279    * @return
 280    */
 281   private JPanel initEditingTab()
 282   {
 283     JPanel editingTab = new JPanel();
 284     editingTab.setLayout(null);
 285     autoCalculateConsCheck.setFont(verdana11);
 286     autoCalculateConsCheck.setText(MessageManager
 287             .getString("label.autocalculate_consensus"));
 288     autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));
 289     padGaps.setFont(verdana11);
 290     padGaps.setText(MessageManager.getString("label.pad_gaps_when_editing"));
 291     padGaps.setBounds(new Rectangle(22, 94, 168, 23));
 292     sortByTree.setFont(verdana11);
 293     sortByTree
 294             .setText(MessageManager.getString("label.sort_with_new_tree"));
 295     sortByTree
 296             .setToolTipText(MessageManager
 297                     .getString("label.any_trees_calculated_or_loaded_alignment_automatically_sort"));
 298     sortByTree.setBounds(new Rectangle(22, 136, 168, 23));
 299     editingTab.add(autoCalculateConsCheck);
 300     editingTab.add(padGaps);
 301     editingTab.add(sortByTree);
 302     return editingTab;
 303   }
 304
 305   /**
 306    * Initialises the Output tabbed panel.
 307    *
 308    * @return
 309    */
 310   private JPanel initOutputTab()
 311   {
 312     JPanel outputTab = new JPanel();
 313     outputTab.setLayout(null);
 314     JLabel epsLabel = new JLabel();
 315     epsLabel.setFont(verdana11);
 316     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 317     epsLabel.setText(MessageManager.getString("label.eps_rendering_style"));
 318     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));
 319     epsRendering.setFont(verdana11);
 320     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));
 321     JLabel jLabel1 = new JLabel();
 322     jLabel1.setFont(verdana11);
 323     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);
 324     jLabel1.setText(MessageManager.getString("label.append_start_end"));
 325     jLabel1.setFont(verdana11);
 326     fastajv.setFont(verdana11);
 327     fastajv.setHorizontalAlignment(SwingConstants.LEFT);
 328     clustaljv.setText(MessageManager.getString("label.clustal") + "     ");
 329     blcjv.setText(MessageManager.getString("label.blc") + "     ");
 330     fastajv.setText(MessageManager.getString("label.fasta") + "     ");
 331     msfjv.setText(MessageManager.getString("label.msf") + "     ");
 332     pfamjv.setText(MessageManager.getString("label.pfam") + "     ");
 333     pileupjv.setText(MessageManager.getString("label.pileup") + "     ");
 334     msfjv.setFont(verdana11);
 335     msfjv.setHorizontalAlignment(SwingConstants.LEFT);
 336     pirjv.setText(MessageManager.getString("label.pir") + "     ");
 337     JPanel jPanel11 = new JPanel();
 338     jPanel11.setFont(verdana11);
 339     TitledBorder titledBorder2 = new TitledBorder(
 340             MessageManager.getString("label.file_output"));
 341     jPanel11.setBorder(titledBorder2);
 342     jPanel11.setBounds(new Rectangle(30, 72, 196, 182));
 343     GridLayout gridLayout3 = new GridLayout();
 344     jPanel11.setLayout(gridLayout3);
 345     gridLayout3.setRows(8);
 346     blcjv.setFont(verdana11);
 347     blcjv.setHorizontalAlignment(SwingConstants.LEFT);
 348     clustaljv.setFont(verdana11);
 349     clustaljv.setHorizontalAlignment(SwingConstants.LEFT);
 350     pfamjv.setFont(verdana11);
 351     pfamjv.setHorizontalAlignment(SwingConstants.LEFT);
 352     pileupjv.setFont(verdana11);
 353     pileupjv.setHorizontalAlignment(SwingConstants.LEFT);
 354     pirjv.setFont(verdana11);
 355     pirjv.setHorizontalAlignment(SwingConstants.LEFT);
 356     autoIdWidth.setFont(verdana11);
 357     autoIdWidth.setText(MessageManager
 358             .getString("label.automatically_set_id_width"));
 359     autoIdWidth
 360             .setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.getString("label.adjusts_width_generated_eps_png")));
 361     autoIdWidth.setBounds(new Rectangle(228, 96, 188, 23));
 362     autoIdWidth.addActionListener(new ActionListener()
 363     {
 364
 365       @Override
 366       public void actionPerformed(ActionEvent e)
 367       {
 368         autoIdWidth_actionPerformed();
 369       }
 370     });
 371     userIdWidthlabel.setFont(verdana11);
 372     userIdWidthlabel.setText(MessageManager
 373             .getString("label.figure_id_column_width"));
 374     userIdWidth
 375             .setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.getString("label.manually_specify_width_left_column")));
 376     userIdWidthlabel
 377             .setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.getString("label.manually_specify_width_left_column")));
 378     userIdWidthlabel.setBounds(new Rectangle(236, 120, 168, 23));
 379     userIdWidth.setFont(JvSwingUtils.getTextAreaFont());
 380     userIdWidth.setText("");
 381     userIdWidth.setBounds(new Rectangle(232, 144, 84, 23));
 382     userIdWidth.addActionListener(new ActionListener()
 383     {
 384
 385       @Override
 386       public void actionPerformed(ActionEvent e)
 387       {
 388         userIdWidth_actionPerformed();
 389       }
 390     });
 391     jPanel11.add(jLabel1);
 392     jPanel11.add(blcjv);
 393     jPanel11.add(clustaljv);
 394     jPanel11.add(fastajv);
 395     jPanel11.add(msfjv);
 396     jPanel11.add(pfamjv);
 397     jPanel11.add(pileupjv);
 398     jPanel11.add(pirjv);
 399     outputTab.add(autoIdWidth);
 400     outputTab.add(userIdWidth);
 401     outputTab.add(userIdWidthlabel);
 402     outputTab.add(modellerOutput);
 403     outputTab.add(epsLabel);
 404     outputTab.add(epsRendering);
 405     outputTab.add(jPanel11);
 406     modellerOutput.setFont(verdana11);
 407     modellerOutput.setText(MessageManager
 408             .getString("label.use_modeller_output"));
 409     modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));
 410     return outputTab;
 411   }
 412
 413   /**
 414    * Initialises the Connections tabbed panel.
 415    *
 416    * @return
 417    */
 418   private JPanel initConnectionsTab()
 419   {
 420     JPanel connectTab = new JPanel();
 421     connectTab.setLayout(new GridBagLayout());
 422     JLabel serverLabel = new JLabel();
 423     serverLabel.setText(MessageManager.getString("label.address"));
 424     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 425     serverLabel.setFont(verdana11);
 426     proxyServerTB.setFont(verdana11);
 427     proxyPortTB.setFont(verdana11);
 428     JLabel portLabel = new JLabel();
 429     portLabel.setFont(verdana11);
 430     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 431     portLabel.setText(MessageManager.getString("label.port"));
 432     JLabel browserLabel = new JLabel();
 433     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));
 434     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);
 435     browserLabel.setText(MessageManager
 436             .getString("label.default_browser_unix"));
 437     defaultBrowser.setFont(verdana11);
 438     defaultBrowser.setText("");
 439     usagestats.setText(MessageManager
 440             .getString("label.send_usage_statistics"));
 441     usagestats.setFont(verdana11);
 442     usagestats.setHorizontalAlignment(SwingConstants.RIGHT);
 443     usagestats.setHorizontalTextPosition(SwingConstants.LEADING);
 444     questionnaire.setText(MessageManager
 445             .getString("label.check_for_questionnaires"));
 446     questionnaire.setFont(verdana11);
 447     questionnaire.setHorizontalAlignment(SwingConstants.RIGHT);
 448     questionnaire.setHorizontalTextPosition(SwingConstants.LEADING);
 449     versioncheck.setText(MessageManager
 450             .getString("label.check_for_latest_version"));
 451     versioncheck.setFont(verdana11);
 452     versioncheck.setHorizontalAlignment(SwingConstants.RIGHT);
 453     versioncheck.setHorizontalTextPosition(SwingConstants.LEADING);
 454     JButton newLink = new JButton();
 455     newLink.setText(MessageManager.getString("action.new"));
 456     newLink.addActionListener(new java.awt.event.ActionListener()
 457     {
 458       public void actionPerformed(ActionEvent e)
 459       {
 460         newLink_actionPerformed(e);
 461       }
 462     });
 463     JButton editLink = new JButton();
 464     editLink.setText(MessageManager.getString("action.edit"));
 465     editLink.addActionListener(new java.awt.event.ActionListener()
 466     {
 467       public void actionPerformed(ActionEvent e)
 468       {
 469         editLink_actionPerformed(e);
 470       }
 471     });
 472     JButton deleteLink = new JButton();
 473     deleteLink.setText(MessageManager.getString("action.delete"));
 474     deleteLink.addActionListener(new java.awt.event.ActionListener()
 475     {
 476       public void actionPerformed(ActionEvent e)
 477       {
 478         deleteLink_actionPerformed(e);
 479       }
 480     });
 481
 482     linkURLList.addListSelectionListener(new ListSelectionListener()
 483     {
 484       public void valueChanged(ListSelectionEvent e)
 485       {
 486         int index = linkURLList.getSelectedIndex();
 487         linkNameList.setSelectedIndex(index);
 488       }
 489     });
 490
 491     linkNameList.addListSelectionListener(new ListSelectionListener()
 492     {
 493       public void valueChanged(ListSelectionEvent e)
 494       {
 495         int index = linkNameList.getSelectedIndex();
 496         linkURLList.setSelectedIndex(index);
 497       }
 498     });
 499
 500     JScrollPane linkScrollPane = new JScrollPane();
 501     linkScrollPane.setBorder(null);
 502     JPanel linkPanel = new JPanel();
 503     linkPanel.setBorder(new TitledBorder(MessageManager
 504             .getString("label.url_linkfrom_sequence_id")));
 505     linkPanel.setLayout(new BorderLayout());
 506     GridLayout gridLayout1 = new GridLayout();
 507     JPanel editLinkButtons = new JPanel();
 508     editLinkButtons.setLayout(gridLayout1);
 509     gridLayout1.setRows(3);
 510     linkNameList.setFont(verdana11);
 511     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
 512     BorderLayout borderLayout3 = new BorderLayout();
 513     JPanel linkPanel2 = new JPanel();
 514     linkPanel2.setLayout(borderLayout3);
 515     linkURLList.setFont(verdana11);
 516     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
 517
 518     defaultBrowser.addMouseListener(new MouseAdapter()
 519     {
 520       public void mouseClicked(MouseEvent e)
 521       {
 522         if (e.getClickCount() > 1)
 523         {
 524           defaultBrowser_mouseClicked(e);
 525         }
 526       }
 527     });
 528     useProxy.setFont(verdana11);
 529     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);
 530     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);
 531     useProxy.setText(MessageManager.getString("label.use_proxy_server"));
 532     useProxy.addActionListener(new ActionListener()
 533     {
 534       public void actionPerformed(ActionEvent e)
 535       {
 536         useProxy_actionPerformed();
 537       }
 538     });
 539     linkPanel.add(editLinkButtons, BorderLayout.EAST);
 540     editLinkButtons.add(newLink, null);
 541     editLinkButtons.add(editLink, null);
 542     editLinkButtons.add(deleteLink, null);
 543     linkPanel.add(linkScrollPane, BorderLayout.CENTER);
 544     linkScrollPane.getViewport().add(linkPanel2, null);
 545     linkPanel2.add(linkURLList, BorderLayout.CENTER);
 546     linkPanel2.add(linkNameList, BorderLayout.WEST);
 547     JPanel jPanel1 = new JPanel();
 548     TitledBorder titledBorder1 = new TitledBorder(
 549             MessageManager.getString("label.proxy_server"));
 550     jPanel1.setBorder(titledBorder1);
 551     jPanel1.setLayout(new GridBagLayout());
 552     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0,
 553             GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
 554                     2, 4, 0), 5, 0));
 555     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0,
 556             GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
 557                     0, 4, 0), 11, 6));
 558     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0,
 559             GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(
 560                     16, 0, 0, 12), 359, -17));
 561     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0,
 562             GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(
 563                     21, 0, 35, 12), 4, 6));
 564     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0,
 565             0.0, GridBagConstraints.WEST, GridBagConstraints.NONE,
 566             new Insets(16, 0, 0, 0), 5, 1));
 567     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0,
 568             GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0,
 569                     2, 5, 185), 2, -4));
 570     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0,
 571             GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 572             new Insets(0, 2, 4, 2), 54, 1));
 573     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0,
 574             GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 575             new Insets(0, 2, 4, 0), 263, 1));
 576     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0,
 577             0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 578             new Insets(15, 0, 0, 15), 307, 1));
 579     connectTab.add(usagestats, new GridBagConstraints(0, 4, 1, 1, 1.0, 0.0,
 580             GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 581             new Insets(0, 2, 4, 2), 70, 1));
 582     connectTab.add(questionnaire, new GridBagConstraints(1, 4, 1, 1, 1.0,
 583             0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 584             new Insets(0, 2, 4, 2), 70, 1));
 585     connectTab.add(versioncheck, new GridBagConstraints(0, 5, 1, 1, 1.0,
 586             0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
 587             new Insets(0, 2, 4, 2), 70, 1));
 588     return connectTab;
 589   }
 590
 591   /**
 592    * Initialises the parent panel which contains the tabbed sections.
 593    *
 594    * @return
 595    */
 596   private JPanel initOkCancelPanel()
 597   {
 598     JButton ok = new JButton();
 599     ok.setText(MessageManager.getString("action.ok"));
 600     ok.addActionListener(new ActionListener()
 601     {
 602       public void actionPerformed(ActionEvent e)
 603       {
 604         ok_actionPerformed(e);
 605       }
 606     });
 607     JButton cancel = new JButton();
 608     cancel.setText(MessageManager.getString("action.cancel"));
 609     cancel.addActionListener(new ActionListener()
 610     {
 611       public void actionPerformed(ActionEvent e)
 612       {
 613         cancel_actionPerformed(e);
 614       }
 615     });
 616     JPanel okCancelPanel = new JPanel();
 617     okCancelPanel.add(ok);
 618     okCancelPanel.add(cancel);
 619     return okCancelPanel;
 620   }
 621
 622   /**
 623    * Initialises the Colours tabbed panel.
 624    *
 625    * @return
 626    */
 627   private JPanel initColoursTab()
 628   {
 629     JPanel coloursTab = new JPanel();
 630     coloursTab.setBorder(new TitledBorder(MessageManager
 631             .getString("action.open_new_alignment")));
 632     coloursTab.setLayout(new FlowLayout());
 633     JLabel mincolourLabel = new JLabel();
 634     mincolourLabel.setFont(verdana11);
 635     mincolourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 636     mincolourLabel.setText(MessageManager.getString("label.min_colour"));
 637     minColour.setFont(verdana11);
 638     minColour.setBorder(BorderFactory.createEtchedBorder());
 639     minColour.setPreferredSize(new Dimension(40, 20));
 640     minColour.addMouseListener(new MouseAdapter()
 641     {
 642       public void mousePressed(MouseEvent e)
 643       {
 644         minColour_actionPerformed(minColour);
 645       }
 646     });
 647     JLabel maxcolourLabel = new JLabel();
 648     maxcolourLabel.setFont(verdana11);
 649     maxcolourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 650     maxcolourLabel.setText(MessageManager.getString("label.max_colour"));
 651     maxColour.setFont(verdana11);
 652     maxColour.setBorder(BorderFactory.createEtchedBorder());
 653     maxColour.setPreferredSize(new Dimension(40, 20));
 654     maxColour.addMouseListener(new MouseAdapter()
 655     {
 656       public void mousePressed(MouseEvent e)
 657       {
 658         maxColour_actionPerformed(maxColour);
 659       }
 660     });
 661     colour.setFont(verdana11);
 662     colour.setBounds(new Rectangle(172, 225, 155, 21));
 663     JLabel colourLabel = new JLabel();
 664     colourLabel.setFont(verdana11);
 665     colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 666     colourLabel.setText(MessageManager.getString("label.alignment_colour")
 667             + " ");
 668     JvSwingUtils.addtoLayout(coloursTab, MessageManager
 669             .getString("label.default_colour_scheme_for_alignment"),
 670             colourLabel, colour);
 671     JPanel annotationShding = new JPanel();
 672     annotationShding.setBorder(new TitledBorder(MessageManager
 673             .getString("label.annotation_shading_default")));
 674     annotationShding.setLayout(new GridLayout(1, 2));
 675     JvSwingUtils.addtoLayout(annotationShding, MessageManager
 676             .getString("label.default_minimum_colour_annotation_shading"),
 677             mincolourLabel, minColour);
 678     JvSwingUtils.addtoLayout(annotationShding, MessageManager
 679             .getString("label.default_maximum_colour_annotation_shading"),
 680             maxcolourLabel, maxColour);
 681     coloursTab.add(annotationShding); // , FlowLayout.LEFT);
 682     return coloursTab;
 683   }
 684
 685   /**
 686    * Initialises the Structure tabbed panel.
 687    *
 688    * @return
 689    */
 690   private JPanel initStructureTab()
 691   {
 692     JPanel structureTab = new JPanel();
 693     structureTab.setBorder(new TitledBorder(MessageManager
 694             .getString("label.structure_options")));
 695     structureTab.setLayout(null);
 696     final int width = 400;
 697     final int height = 23;
 698     final int lineSpacing = 30;
 699     int ypos = 30;
 700
 701     structFromPdb.setFont(verdana11);
 702     structFromPdb.setText(MessageManager.getString("label.struct_from_pdb"));
 703     structFromPdb.setBounds(new Rectangle(5, ypos, width, height));
 704     structFromPdb.addActionListener(new ActionListener()
 705     {
 706       @Override
 707       public void actionPerformed(ActionEvent e)
 708       {
 709         boolean selected = structFromPdb.isSelected();
 710         // enable other options only when the first is checked
 711         useRnaView.setEnabled(selected);
 712         addSecondaryStructure.setEnabled(selected);
 713         addTempFactor.setEnabled(selected);
 714       }
 715     });
 716     structureTab.add(structFromPdb);
 717
 718     // indent checkboxes that are conditional on the first one
 719     ypos += lineSpacing;
 720     useRnaView.setFont(verdana11);
 721     useRnaView.setText(MessageManager.getString("label.use_rnaview"));
 722     useRnaView.setBounds(new Rectangle(25, ypos, width, height));
 723     structureTab.add(useRnaView);
 724
 725     ypos += lineSpacing;
 726     addSecondaryStructure.setFont(verdana11);
 727     addSecondaryStructure.setText(MessageManager
 728             .getString("label.autoadd_secstr"));
 729     addSecondaryStructure.setBounds(new Rectangle(25, ypos, width, height));
 730     structureTab.add(addSecondaryStructure);
 731
 732     ypos += lineSpacing;
 733     addTempFactor.setFont(verdana11);
 734     addTempFactor.setText(MessageManager.getString("label.autoadd_temp"));
 735     addTempFactor.setBounds(new Rectangle(25, ypos, width, height));
 736     structureTab.add(addTempFactor);
 737
 738     ypos += lineSpacing;
 739     JLabel viewerLabel = new JLabel();
 740     viewerLabel.setFont(verdana11);
 741     viewerLabel.setHorizontalAlignment(SwingConstants.LEFT);
 742     viewerLabel.setText(MessageManager.getString("label.structure_viewer"));
 743     viewerLabel.setBounds(new Rectangle(10, ypos, 200, height));
 744     structureTab.add(viewerLabel);
 745
 746     structViewer.setFont(verdana11);
 747     structViewer.setBounds(new Rectangle(150, ypos, 120, height));
 748     structViewer.addItem(Viewer.JMOL.name());
 749     structViewer.addItem(Viewer.CHIMERA.name());
 750     structureTab.add(structViewer);
 751
 752     return structureTab;
 753   }
 754
 755   /**
 756    * Initialises the Visual tabbed panel.
 757    *
 758    * @return
 759    */
 760   private JPanel initVisualTab()
 761   {
 762     JPanel visualTab = new JPanel();
 763     visualTab.setBorder(new TitledBorder(MessageManager
 764             .getString("action.open_new_alignment")));
 765     visualTab.setLayout(null);
 766     fullScreen.setFont(verdana11);
 767     fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);
 768     fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);
 769     fullScreen.setText(MessageManager.getString("label.maximize_window"));
 770     quality.setEnabled(false);
 771     quality.setFont(verdana11);
 772     quality.setHorizontalAlignment(SwingConstants.RIGHT);
 773     quality.setHorizontalTextPosition(SwingConstants.LEFT);
 774     quality.setSelected(true);
 775     quality.setText(MessageManager.getString("label.quality"));
 776     conservation.setEnabled(false);
 777     conservation.setFont(verdana11);
 778     conservation.setHorizontalAlignment(SwingConstants.RIGHT);
 779     conservation.setHorizontalTextPosition(SwingConstants.LEFT);
 780     conservation.setSelected(true);
 781     conservation.setText(MessageManager.getString("label.conservation"));
 782     identity.setEnabled(false);
 783     identity.setFont(verdana11);
 784     identity.setHorizontalAlignment(SwingConstants.RIGHT);
 785     identity.setHorizontalTextPosition(SwingConstants.LEFT);
 786     identity.setSelected(true);
 787     identity.setText(MessageManager.getString("label.consensus"));
 788     JLabel showGroupbits = new JLabel();
 789     showGroupbits.setFont(verdana11);
 790     showGroupbits.setHorizontalAlignment(SwingConstants.RIGHT);
 791     showGroupbits.setHorizontalTextPosition(SwingConstants.LEFT);
 792     showGroupbits.setText(MessageManager.getString("action.show_group")
 793             + ":");
 794     JLabel showConsensbits = new JLabel();
 795     showConsensbits.setFont(verdana11);
 796     showConsensbits.setHorizontalAlignment(SwingConstants.RIGHT);
 797     showConsensbits.setHorizontalTextPosition(SwingConstants.LEFT);
 798     showConsensbits.setText(MessageManager.getString("label.consensus")
 799             + ":");
 800     showConsensHistogram.setEnabled(false);
 801     showConsensHistogram.setFont(verdana11);
 802     showConsensHistogram.setHorizontalAlignment(SwingConstants.RIGHT);
 803     showConsensHistogram.setHorizontalTextPosition(SwingConstants.LEFT);
 804     showConsensHistogram.setSelected(true);
 805     showConsensHistogram.setText(MessageManager
 806             .getString("label.histogram"));
 807     showConsensLogo.setEnabled(false);
 808     showConsensLogo.setFont(verdana11);
 809     showConsensLogo.setHorizontalAlignment(SwingConstants.RIGHT);
 810     showConsensLogo.setHorizontalTextPosition(SwingConstants.LEFT);
 811     showConsensLogo.setSelected(true);
 812     showConsensLogo.setText(MessageManager.getString("label.logo"));
 813     showGroupConsensus.setEnabled(false);
 814     showGroupConsensus.setFont(verdana11);
 815     showGroupConsensus.setHorizontalAlignment(SwingConstants.RIGHT);
 816     showGroupConsensus.setHorizontalTextPosition(SwingConstants.LEFT);
 817     showGroupConsensus.setSelected(true);
 818     showGroupConsensus.setText(MessageManager.getString("label.consensus"));
 819     showGroupConservation.setEnabled(false);
 820     showGroupConservation.setFont(verdana11);
 821     showGroupConservation.setHorizontalAlignment(SwingConstants.RIGHT);
 822     showGroupConservation.setHorizontalTextPosition(SwingConstants.LEFT);
 823     showGroupConservation.setSelected(true);
 824     showGroupConservation.setText(MessageManager
 825             .getString("label.conservation"));
 826     showNpTooltip.setEnabled(true);
 827     showNpTooltip.setFont(verdana11);
 828     showNpTooltip.setHorizontalAlignment(SwingConstants.RIGHT);
 829     showNpTooltip.setHorizontalTextPosition(SwingConstants.LEFT);
 830     showNpTooltip.setSelected(true);
 831     showNpTooltip.setText(MessageManager
 832             .getString("label.non_positional_features"));
 833     showDbRefTooltip.setEnabled(true);
 834     showDbRefTooltip.setFont(verdana11);
 835     showDbRefTooltip.setHorizontalAlignment(SwingConstants.RIGHT);
 836     showDbRefTooltip.setHorizontalTextPosition(SwingConstants.LEFT);
 837     showDbRefTooltip.setSelected(true);
 838     showDbRefTooltip.setText(MessageManager
 839             .getString("label.database_references"));
 840     annotations.setFont(verdana11);
 841     annotations.setHorizontalAlignment(SwingConstants.RIGHT);
 842     annotations.setHorizontalTextPosition(SwingConstants.LEADING);
 843     annotations.setSelected(true);
 844     annotations.setText(MessageManager.getString("label.show_annotations"));
 845     annotations.setBounds(new Rectangle(169, 12, 200, 23));
 846     annotations.addActionListener(new ActionListener()
 847     {
 848       public void actionPerformed(ActionEvent e)
 849       {
 850         annotations_actionPerformed(e);
 851       }
 852     });
 853     identity.addActionListener(new ActionListener()
 854     {
 855       public void actionPerformed(ActionEvent e)
 856       {
 857         annotations_actionPerformed(e);
 858       }
 859     });
 860     showGroupConsensus.addActionListener(new ActionListener()
 861     {
 862       public void actionPerformed(ActionEvent e)
 863       {
 864         annotations_actionPerformed(e);
 865       }
 866     });
 867     showUnconserved.setFont(verdana11);
 868     showUnconserved.setHorizontalAlignment(SwingConstants.RIGHT);
 869     showUnconserved.setHorizontalTextPosition(SwingConstants.LEFT);
 870     showUnconserved.setSelected(true);
 871     showUnconserved.setText(MessageManager
 872             .getString("action.show_unconserved"));
 873     showUnconserved.addActionListener(new ActionListener()
 874     {
 875       public void actionPerformed(ActionEvent e)
 876       {
 877         showunconserved_actionPerformed(e);
 878       }
 879     });
 880
 881     // TODO these are not yet added to / action from Preferences
 882     // JCheckBox shareSelections = new JCheckBox();
 883     // shareSelections.setFont(verdana11);
 884     // shareSelections.setHorizontalAlignment(SwingConstants.RIGHT);
 885     // shareSelections.setHorizontalTextPosition(SwingConstants.LEFT);
 886     // shareSelections.setSelected(true);
 887     // shareSelections.setText(MessageManager
 888     // .getString("label.share_selection_across_views"));
 889     // JCheckBox followHighlight = new JCheckBox();
 890     // followHighlight.setFont(verdana11);
 891     // followHighlight.setHorizontalAlignment(SwingConstants.RIGHT);
 892     // followHighlight.setHorizontalTextPosition(SwingConstants.LEFT);
 893     // // showUnconserved.setBounds(new Rectangle(169, 40, 200, 23));
 894     // followHighlight.setSelected(true);
 895     // followHighlight.setText(MessageManager
 896     // .getString("label.scroll_highlighted_regions"));
 897
 898     seqLimit.setFont(verdana11);
 899     seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);
 900     seqLimit.setHorizontalTextPosition(SwingConstants.LEFT);
 901     seqLimit.setText(MessageManager.getString("label.full_sequence_id"));
 902     smoothFont.setFont(verdana11);
 903     smoothFont.setHorizontalAlignment(SwingConstants.RIGHT);
 904     smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);
 905     smoothFont.setText(MessageManager.getString("label.smooth_font"));
 906     JLabel gapLabel = new JLabel();
 907     gapLabel.setFont(verdana11);
 908     gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 909     gapLabel.setText(MessageManager.getString("label.gap_symbol") + " ");
 910     JLabel fontLabel = new JLabel();
 911     fontLabel.setFont(verdana11);
 912     fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 913     fontLabel.setText(MessageManager.getString("label.font"));
 914     fontSizeCB.setFont(verdana11);
 915     fontSizeCB.setBounds(new Rectangle(320, 104, 65, 23));
 916     fontStyleCB.setFont(verdana11);
 917     fontStyleCB.setBounds(new Rectangle(382, 104, 80, 23));
 918     fontNameCB.setFont(verdana11);
 919     fontNameCB.setBounds(new Rectangle(172, 104, 147, 23));
 920     gapSymbolCB.setFont(verdana11);
 921     gapSymbolCB.setBounds(new Rectangle(172, 196, 69, 23));
 922     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();
 923     dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);
 924     gapSymbolCB.setRenderer(dlcr);
 925
 926     startupCheckbox.setText(MessageManager.getString("action.open_file"));
 927     startupCheckbox.setFont(verdana11);
 928     startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);
 929     startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);
 930     startupCheckbox.setSelected(true);
 931     startupFileTextfield.setFont(verdana11);
 932     startupFileTextfield.setBounds(new Rectangle(172, 290, 270, 20));
 933     startupFileTextfield.addMouseListener(new MouseAdapter()
 934     {
 935       public void mouseClicked(MouseEvent e)
 936       {
 937         if (e.getClickCount() > 1)
 938         {
 939           startupFileTextfield_mouseClicked();
 940         }
 941       }
 942     });
 943
 944     sortby.setFont(verdana11);
 945     sortby.setBounds(new Rectangle(172, 240, 155, 21));
 946     JLabel sortLabel = new JLabel();
 947     sortLabel.setFont(verdana11);
 948     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 949     sortLabel.setText(MessageManager.getString("label.sort_by"));
 950     sortAnnBy.setFont(verdana11);
 951     sortAnnBy.setBounds(new Rectangle(172, 265, 110, 21));
 952     JLabel sortAnnLabel = new JLabel();
 953     sortAnnLabel.setFont(verdana11);
 954     sortAnnLabel.setHorizontalAlignment(SwingConstants.RIGHT);
 955     sortAnnLabel.setText(MessageManager.getString("label.sort_ann_by"));
 956     sortAutocalc.setFont(verdana11);
 957     sortAutocalc.setBounds(new Rectangle(290, 265, 165, 21));
 958     JPanel annsettingsPanel = new JPanel();
 959     annsettingsPanel.setBounds(new Rectangle(173, 34, 300, 61));
 960     annsettingsPanel.setLayout(new FlowLayout(FlowLayout.LEFT, 0, 0));
 961     JPanel autoAnnotSettings1 = new JPanel();
 962     autoAnnotSettings1.setLayout(new GridLayout(3, 1, 0, 0));
 963     annsettingsPanel.add(autoAnnotSettings1);
 964     JPanel autoAnnotSettings2 = new JPanel();
 965     autoAnnotSettings2.setLayout(new GridLayout(3, 1, 0, 0));
 966     annsettingsPanel.add(autoAnnotSettings2);
 967     JPanel autoAnnotSettings3 = new JPanel();
 968     autoAnnotSettings3.setLayout(new GridLayout(3, 1, 0, 0));
 969     annsettingsPanel.add(autoAnnotSettings3);
 970     visualTab.add(annsettingsPanel);
 971     Border jb = new EmptyBorder(1, 1, 4, 5);
 972     quality.setBorder(jb);
 973     conservation.setBorder(jb);
 974     identity.setBorder(jb);
 975     showConsensbits.setBorder(jb);
 976     showGroupbits.setBorder(jb);
 977     showGroupConsensus.setBorder(jb);
 978     showGroupConservation.setBorder(jb);
 979     showConsensHistogram.setBorder(jb);
 980     showConsensLogo.setBorder(jb);
 981
 982     autoAnnotSettings2.add(conservation);
 983     autoAnnotSettings1.add(quality);
 984     autoAnnotSettings3.add(identity);
 985     autoAnnotSettings1.add(showGroupbits);
 986     autoAnnotSettings3.add(showGroupConsensus);
 987     autoAnnotSettings2.add(showGroupConservation);
 988     autoAnnotSettings1.add(showConsensbits);
 989     autoAnnotSettings2.add(showConsensHistogram);
 990     autoAnnotSettings3.add(showConsensLogo);
 991
 992     JPanel tooltipSettings = new JPanel();
 993     tooltipSettings.setBorder(new TitledBorder(MessageManager
 994             .getString("label.sequence_id_tooltip")));
 995     tooltipSettings.setBounds(173, 130, 200, 62);
 996     tooltipSettings.setLayout(new GridLayout(2, 1));
 997     tooltipSettings.add(showDbRefTooltip);
 998     tooltipSettings.add(showNpTooltip);
 999     visualTab.add(tooltipSettings);
1000
1001     wrap.setFont(verdana11);
1002     wrap.setHorizontalAlignment(SwingConstants.TRAILING);
1003     wrap.setHorizontalTextPosition(SwingConstants.LEADING);
1004     wrap.setText(MessageManager.getString("label.wrap_alignment"));
1005     rightAlign.setFont(verdana11);
1006     rightAlign.setForeground(Color.black);
1007     rightAlign.setHorizontalAlignment(SwingConstants.RIGHT);
1008     rightAlign.setHorizontalTextPosition(SwingConstants.LEFT);
1009     rightAlign.setText(MessageManager.getString("label.right_align_ids"));
1010     idItalics.setFont(verdana11);
1011     idItalics.setHorizontalAlignment(SwingConstants.RIGHT);
1012     idItalics.setHorizontalTextPosition(SwingConstants.LEADING);
1013     idItalics.setText(MessageManager
1014             .getString("label.sequence_name_italics"));
1015     openoverv.setFont(verdana11);
1016     openoverv.setActionCommand(MessageManager
1017             .getString("label.open_overview"));
1018     openoverv.setHorizontalAlignment(SwingConstants.RIGHT);
1019     openoverv.setHorizontalTextPosition(SwingConstants.LEFT);
1020     openoverv.setText(MessageManager.getString(("label.open_overview")));
1021     JPanel jPanel2 = new JPanel();
1022     jPanel2.setBounds(new Rectangle(7, 17, 158, 297));
1023     GridLayout gridLayout2 = new GridLayout();
1024     jPanel2.setLayout(gridLayout2);
1025     gridLayout2.setRows(13);
1026     jPanel2.add(fullScreen);
1027     jPanel2.add(openoverv);
1028     jPanel2.add(seqLimit);
1029     jPanel2.add(rightAlign);
1030     jPanel2.add(fontLabel);
1031     jPanel2.add(showUnconserved);
1032     jPanel2.add(idItalics);
1033     jPanel2.add(smoothFont);
1034     jPanel2.add(gapLabel);
1035     jPanel2.add(wrap);
1036     jPanel2.add(sortLabel);
1037     jPanel2.add(sortAnnLabel);
1038     jPanel2.add(startupCheckbox);
1039     visualTab.add(jPanel2);
1040     visualTab.add(annotations);
1041     visualTab.add(startupFileTextfield);
1042     visualTab.add(sortby);
1043     visualTab.add(sortAnnBy);
1044     visualTab.add(sortAutocalc);
1045     visualTab.add(gapSymbolCB);
1046     visualTab.add(fontNameCB);
1047     visualTab.add(fontSizeCB);
1048     visualTab.add(fontStyleCB);
1049     return visualTab;
1050   }
1051
1052   protected void autoIdWidth_actionPerformed()
1053   {
1054     // TODO Auto-generated method stub
1055
1056   }
1057
1058   protected void userIdWidth_actionPerformed()
1059   {
1060     // TODO Auto-generated method stub
1061
1062   }
1063
1064   protected void maxColour_actionPerformed(JPanel panel)
1065   {
1066   }
1067
1068   protected void minColour_actionPerformed(JPanel panel)
1069   {
1070   }
1071
1072   protected void showunconserved_actionPerformed(ActionEvent e)
1073   {
1074     // TODO Auto-generated method stub
1075
1076   }
1077
1078   /**
1079    * DOCUMENT ME!
1080    *
1081    * @param e
1082    *          DOCUMENT ME!
1083    */
1084   public void ok_actionPerformed(ActionEvent e)
1085   {
1086   }
1087
1088   /**
1089    * DOCUMENT ME!
1090    *
1091    * @param e
1092    *          DOCUMENT ME!
1093    */
1094   public void cancel_actionPerformed(ActionEvent e)
1095   {
1096   }
1097
1098   /**
1099    * DOCUMENT ME!
1100    *
1101    * @param e
1102    *          DOCUMENT ME!
1103    */
1104   public void annotations_actionPerformed(ActionEvent e)
1105   {
1106   }
1107
1108   /**
1109    * DOCUMENT ME!
1110    */
1111   public void startupFileTextfield_mouseClicked()
1112   {
1113   }
1114
1115   public void newLink_actionPerformed(ActionEvent e)
1116   {
1117
1118   }
1119
1120   public void editLink_actionPerformed(ActionEvent e)
1121   {
1122
1123   }
1124
1125   public void deleteLink_actionPerformed(ActionEvent e)
1126   {
1127
1128   }
1129
1130   public void defaultBrowser_mouseClicked(MouseEvent e)
1131   {
1132
1133   }
1134
1135   public void linkURLList_keyTyped(KeyEvent e)
1136   {
1137
1138   }
1139
1140   public void useProxy_actionPerformed()
1141   {
1142     proxyServerTB.setEnabled(useProxy.isSelected());
1143     proxyPortTB.setEnabled(useProxy.isSelected());
1144   }
1145
1146 }