src/jalview/jbgui/GPreferences.java

   1 /*\r
   2 * Jalview - A Sequence Alignment Editor and Viewer\r
   3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4 *\r
   5 * This program is free software; you can redistribute it and/or\r
   6 * modify it under the terms of the GNU General Public License\r
   7 * as published by the Free Software Foundation; either version 2\r
   8 * of the License, or (at your option) any later version.\r
   9 *\r
  10 * This program is distributed in the hope that it will be useful,\r
  11 * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13 * GNU General Public License for more details.\r
  14 *\r
  15 * You should have received a copy of the GNU General Public License\r
  16 * along with this program; if not, write to the Free Software\r
  17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18 */\r
  19 package jalview.jbgui;\r
  20 \r
  21 import java.awt.*;\r
  22 \r
  23 import javax.swing.*;\r
  24 import javax.swing.border.TitledBorder;\r
  25 import java.awt.event.*;\r
  26 import javax.swing.event.*;\r
  27 \r
  28 \r
  29 /**\r
  30  * DOCUMENT ME!\r
  31  *\r
  32  * @author $author$\r
  33  * @version $Revision$\r
  34  */\r
  35 public class GPreferences extends JPanel\r
  36 {\r
  37     JTabbedPane tabbedPane = new JTabbedPane();\r
  38 \r
  39     JButton ok = new JButton();\r
  40     JButton cancel = new JButton();\r
  41     JPanel okCancelPanel = new JPanel();\r
  42     BorderLayout borderLayout1 = new BorderLayout();\r
  43     protected JCheckBox quality = new JCheckBox();\r
  44     JPanel visualTab = new JPanel();\r
  45   protected JCheckBox fullScreen = new JCheckBox();\r
  46     protected JCheckBox conservation = new JCheckBox();\r
  47     protected JCheckBox identity = new JCheckBox();\r
  48     protected JCheckBox annotations = new JCheckBox();\r
  49     JLabel gapLabel = new JLabel();\r
  50     protected JComboBox colour = new JComboBox();\r
  51     JLabel colourLabel = new JLabel();\r
  52     JLabel fontLabel = new JLabel();\r
  53     protected JComboBox fontSizeCB = new JComboBox();\r
  54     protected JComboBox fontStyleCB = new JComboBox();\r
  55     protected JComboBox fontNameCB = new JComboBox();\r
  56     protected JComboBox gapSymbolCB = new JComboBox();\r
  57     protected JCheckBox startupCheckbox = new JCheckBox();\r
  58     protected JTextField startupFileTextfield = new JTextField();\r
  59   JPanel connectTab = new JPanel();\r
  60   JLabel serverLabel = new JLabel();\r
  61   protected JList linkURLList = new JList();\r
  62   protected JTextField proxyServerTB = new JTextField();\r
  63   protected JTextField proxyPortTB = new JTextField();\r
  64   JLabel portLabel = new JLabel();\r
  65   JLabel browserLabel = new JLabel();\r
  66   protected JTextField defaultBrowser = new JTextField();\r
  67   JButton newLink = new JButton();\r
  68   JButton editLink = new JButton();\r
  69   JButton deleteLink = new JButton();\r
  70   JScrollPane linkScrollPane = new JScrollPane();\r
  71   JPanel linkPanel = new JPanel();\r
  72   BorderLayout borderLayout2 = new BorderLayout();\r
  73   JPanel editLinkButtons = new JPanel();\r
  74   GridLayout gridLayout1 = new GridLayout();\r
  75   protected JList linkNameList = new JList();\r
  76   JPanel linkPanel2 = new JPanel();\r
  77   BorderLayout borderLayout3 = new BorderLayout();\r
  78   protected JCheckBox useProxy = new JCheckBox();\r
  79   JPanel jPanel1 = new JPanel();\r
  80   TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
  81   TitledBorder titledBorder2 = new TitledBorder("File Output");\r
  82   GridBagLayout gridBagLayout2 = new GridBagLayout();\r
  83   GridBagLayout gridBagLayout1 = new GridBagLayout();\r
  84   GridBagLayout gridBagLayout3 = new GridBagLayout();\r
  85   protected JComboBox sortby = new JComboBox();\r
  86   JLabel sortLabel = new JLabel();\r
  87   JPanel jPanel2 = new JPanel();\r
  88   GridLayout gridLayout2 = new GridLayout();\r
  89   JPanel jPanel3 = new JPanel();\r
  90   JPanel exportTab = new JPanel();\r
  91   JLabel epsLabel = new JLabel();\r
  92   protected JComboBox epsRendering = new JComboBox();\r
  93   JLabel jLabel1 = new JLabel();\r
  94   protected  JCheckBox blcjv = new JCheckBox();\r
  95   protected  JCheckBox pileupjv = new JCheckBox();\r
  96   protected  JCheckBox clustaljv = new JCheckBox();\r
  97   protected  JCheckBox msfjv = new JCheckBox();\r
  98   protected  JCheckBox fastajv = new JCheckBox();\r
  99   protected  JCheckBox pfamjv = new JCheckBox();\r
 100   FlowLayout flowLayout1 = new FlowLayout();\r
 101   protected  JCheckBox pirjv = new JCheckBox();\r
 102   JPanel jPanel11 = new JPanel();\r
 103   Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
 104   protected JCheckBox seqLimit = new JCheckBox();\r
 105   GridLayout gridLayout3 = new GridLayout();\r
 106   protected JCheckBox smoothFont = new JCheckBox();\r
 107   JPanel calcTab = new JPanel();\r
 108   protected JCheckBox autoCalculateConsCheck = new JCheckBox();\r
 109   protected JCheckBox padGaps = new JCheckBox();\r
 110   protected JCheckBox modellerOutput = new JCheckBox();\r
 111   /**\r
 112      * Creates a new GPreferences object.\r
 113      */\r
 114     public GPreferences()\r
 115     {\r
 116         try\r
 117         {\r
 118             jbInit();\r
 119         }\r
 120         catch (Exception ex)\r
 121         {\r
 122             ex.printStackTrace();\r
 123         }\r
 124     }\r
 125 \r
 126     /**\r
 127      * DOCUMENT ME!\r
 128      *\r
 129      * @throws Exception DOCUMENT ME!\r
 130      */\r
 131     private void jbInit() throws Exception\r
 132     {\r
 133         this.setLayout(borderLayout1);\r
 134         ok.setText("OK");\r
 135         ok.addActionListener(new ActionListener()\r
 136             {\r
 137                 public void actionPerformed(ActionEvent e)\r
 138                 {\r
 139                     ok_actionPerformed(e);\r
 140                 }\r
 141             });\r
 142         cancel.setText("Cancel");\r
 143         cancel.addActionListener(new ActionListener()\r
 144             {\r
 145                 public void actionPerformed(ActionEvent e)\r
 146                 {\r
 147                     cancel_actionPerformed(e);\r
 148                 }\r
 149             });\r
 150         quality.setEnabled(false);\r
 151         quality.setFont(verdana11);\r
 152         quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
 153         quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
 154         quality.setSelected(true);\r
 155         quality.setText("Quality");\r
 156     visualTab.setBorder(new TitledBorder("Open new alignment"));\r
 157     visualTab.setLayout(null);\r
 158     fullScreen.setFont(verdana11);\r
 159         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
 160         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
 161     fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
 162     fullScreen.setText("Maximise Window");\r
 163     conservation.setEnabled(false);\r
 164         conservation.setFont(verdana11);\r
 165         conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
 166         conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
 167         conservation.setSelected(true);\r
 168         conservation.setText("Conservation");\r
 169     identity.setEnabled(false);\r
 170         identity.setFont(verdana11);\r
 171         identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
 172         identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
 173         identity.setSelected(true);\r
 174         identity.setText("Consensus");\r
 175     annotations.setFont(verdana11);\r
 176         annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
 177         annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
 178     annotations.setMargin(new Insets(2, 4, 2, 0));\r
 179     annotations.setSelected(true);\r
 180         annotations.setText("Show Annotations");\r
 181     annotations.addActionListener(new ActionListener()\r
 182             {\r
 183                 public void actionPerformed(ActionEvent e)\r
 184                 {\r
 185                     annotations_actionPerformed(e);\r
 186                 }\r
 187             });\r
 188         gapLabel.setFont(verdana11);\r
 189         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 190         gapLabel.setText("Gap Symbol ");\r
 191     colour.setFont(verdana11);\r
 192         colour.setBounds(new Rectangle(171, 180, 155, 21));\r
 193         colourLabel.setFont(verdana11);\r
 194         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 195         colourLabel.setText("Colour ");\r
 196     fontLabel.setFont(verdana11);\r
 197         fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 198         fontLabel.setText("Font ");\r
 199     fontSizeCB.setFont(verdana11);\r
 200         fontSizeCB.setBounds(new Rectangle(318, 100, 49, 21));\r
 201         fontStyleCB.setFont(verdana11);\r
 202         fontStyleCB.setBounds(new Rectangle(366, 100, 70, 21));\r
 203         fontNameCB.setFont(verdana11);\r
 204         fontNameCB.setBounds(new Rectangle(171, 100, 147, 21));\r
 205         gapSymbolCB.setFont(verdana11);\r
 206         gapSymbolCB.setBounds(new Rectangle(171, 153, 69, 21));\r
 207         startupCheckbox.setText("Open file");\r
 208     startupCheckbox.setFont(verdana11);\r
 209         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
 210         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
 211         startupCheckbox.setSelected(true);\r
 212         startupFileTextfield.setFont(verdana11);\r
 213         startupFileTextfield.setBounds(new Rectangle(171, 236, 270, 20));\r
 214         startupFileTextfield.addMouseListener(new MouseAdapter()\r
 215             {\r
 216                 public void mouseClicked(MouseEvent e)\r
 217                 {\r
 218                     if (e.getClickCount() > 1)\r
 219                     {\r
 220                         startupFileTextfield_mouseClicked();\r
 221                     }\r
 222                 }\r
 223             });\r
 224 \r
 225      connectTab.setLayout(gridBagLayout3);\r
 226     serverLabel.setText("Address");\r
 227     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 228     serverLabel.setFont(verdana11);\r
 229     proxyServerTB.setFont(verdana11);\r
 230     proxyPortTB.setFont(verdana11);\r
 231     portLabel.setFont(verdana11);\r
 232     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 233     portLabel.setText("Port");\r
 234     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
 235     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
 236     browserLabel.setText("Default Browser (Unix)");\r
 237     defaultBrowser.setFont(verdana11);\r
 238     defaultBrowser.setText("");\r
 239     newLink.setText("New");\r
 240     newLink.addActionListener(new java.awt.event.ActionListener() {\r
 241       public void actionPerformed(ActionEvent e) {\r
 242         newLink_actionPerformed(e);\r
 243       }\r
 244     });\r
 245     editLink.setText("Edit");\r
 246     editLink.addActionListener(new java.awt.event.ActionListener() {\r
 247       public void actionPerformed(ActionEvent e) {\r
 248         editLink_actionPerformed(e);\r
 249       }\r
 250     });\r
 251     deleteLink.setText("Delete");\r
 252     deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
 253       public void actionPerformed(ActionEvent e) {\r
 254         deleteLink_actionPerformed(e);\r
 255       }\r
 256     });\r
 257 \r
 258     linkURLList.addListSelectionListener(new ListSelectionListener()\r
 259          {\r
 260             public void valueChanged(ListSelectionEvent e)\r
 261             {\r
 262                int index = linkURLList.getSelectedIndex();\r
 263                linkNameList.setSelectedIndex(index);\r
 264             }\r
 265          });\r
 266 \r
 267     linkNameList.addListSelectionListener(new ListSelectionListener()\r
 268         {\r
 269           public void valueChanged(ListSelectionEvent e)\r
 270           {\r
 271               int index = linkNameList.getSelectedIndex();\r
 272               linkURLList.setSelectedIndex(index);\r
 273           }\r
 274         });\r
 275 \r
 276     linkScrollPane.setBorder(null);\r
 277     linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
 278     linkPanel.setLayout(borderLayout2);\r
 279     editLinkButtons.setLayout(gridLayout1);\r
 280     gridLayout1.setRows(3);\r
 281     linkNameList.setFont(verdana11);\r
 282     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 283     linkPanel2.setLayout(borderLayout3);\r
 284     linkURLList.setFont(verdana11);\r
 285     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 286 \r
 287     defaultBrowser.addMouseListener(new MouseAdapter()\r
 288     {\r
 289       public void mouseClicked(MouseEvent e)\r
 290       {\r
 291         if (e.getClickCount() > 1)\r
 292             {\r
 293               defaultBrowser_mouseClicked(e);\r
 294             }\r
 295       }\r
 296     });\r
 297     useProxy.setFont(verdana11);\r
 298     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
 299     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
 300     useProxy.setText("Use a proxy server");\r
 301     useProxy.addActionListener(new ActionListener()\r
 302     {\r
 303       public void actionPerformed(ActionEvent e)\r
 304       {\r
 305         useProxy_actionPerformed();\r
 306       }\r
 307     });\r
 308     jPanel1.setBorder(titledBorder1);\r
 309     jPanel1.setLayout(gridBagLayout1);\r
 310     sortby.setFont(verdana11);\r
 311     sortby.setBounds(new Rectangle(171, 208, 155, 21));\r
 312     sortLabel.setFont(verdana11);\r
 313     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 314     sortLabel.setText("Sort by ");\r
 315     jPanel2.setBounds(new Rectangle(7, 17, 158, 245));\r
 316     jPanel2.setLayout(gridLayout2);\r
 317     gridLayout2.setRows(9);\r
 318     jPanel3.setBounds(new Rectangle(167, 41, 274, 26));\r
 319     exportTab.setLayout(null);\r
 320     epsLabel.setFont(verdana11);\r
 321     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 322     epsLabel.setText("EPS Rendering Style");\r
 323     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
 324     epsRendering.setFont(verdana11);\r
 325     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
 326     jLabel1.setFont(verdana11);\r
 327     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
 328     jLabel1.setText("Append /start-end (/15-380)");\r
 329     jLabel1.setFont(verdana11);\r
 330     fastajv.setFont(verdana11);\r
 331     fastajv.setHorizontalAlignment(SwingConstants.LEFT);\r
 332     clustaljv.setText("Clustal     ");\r
 333     blcjv.setText("BLC     ");\r
 334     fastajv.setText("Fasta     ");\r
 335     msfjv.setText("MSF     ");\r
 336     pfamjv.setText("PFAM     ");\r
 337     pileupjv.setText("Pileup     ");\r
 338     msfjv.setFont(verdana11);\r
 339     msfjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 340     pirjv.setText("PIR     ");\r
 341     jPanel11.setFont(verdana11);\r
 342     jPanel11.setBorder(titledBorder2);\r
 343     jPanel11.setBounds(new Rectangle(30, 72, 196, 182));\r
 344     jPanel11.setLayout(gridLayout3);\r
 345     blcjv.setFont(verdana11);\r
 346     blcjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 347     clustaljv.setFont(verdana11);\r
 348     clustaljv.setHorizontalAlignment(SwingConstants.LEFT);\r
 349     pfamjv.setFont(verdana11);\r
 350     pfamjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 351     pileupjv.setFont(verdana11);\r
 352     pileupjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 353     pirjv.setFont(verdana11);\r
 354     pirjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 355     seqLimit.setFont(verdana11);\r
 356     seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);\r
 357     seqLimit.setHorizontalTextPosition(SwingConstants.LEFT);\r
 358     seqLimit.setText("Full Sequence Id");\r
 359     gridLayout3.setRows(8);\r
 360     smoothFont.setFont(verdana11);\r
 361     smoothFont.setHorizontalAlignment(SwingConstants.RIGHT);\r
 362     smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);\r
 363     smoothFont.setText("Smooth Font");\r
 364     calcTab.setLayout(null);\r
 365     autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 366     autoCalculateConsCheck.setText("AutoCalculate Consensus");\r
 367     autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));\r
 368     padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 369     padGaps.setText("Pad gaps when editing");\r
 370     padGaps.setBounds(new Rectangle(22, 94, 168, 23));\r
 371     modellerOutput.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 372     modellerOutput.setText("Use Modeller Output");\r
 373     modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));\r
 374     jPanel2.add(fullScreen);\r
 375 \r
 376     jPanel2.add(annotations);\r
 377     jPanel2.add(seqLimit);\r
 378     jPanel2.add(fontLabel);\r
 379     jPanel2.add(smoothFont);\r
 380     jPanel2.add(gapLabel);\r
 381     jPanel2.add(colourLabel);\r
 382     jPanel2.add(sortLabel);\r
 383     jPanel2.add(startupCheckbox);\r
 384     visualTab.add(colour);\r
 385     visualTab.add(gapSymbolCB);\r
 386     visualTab.add(startupFileTextfield);\r
 387     visualTab.add(sortby);\r
 388     visualTab.add(fontNameCB);\r
 389     visualTab.add(fontSizeCB);\r
 390     visualTab.add(fontStyleCB);\r
 391     visualTab.add(jPanel3);\r
 392     jPanel3.add(conservation);\r
 393     jPanel3.add(identity);\r
 394     jPanel3.add(quality);\r
 395     visualTab.add(jPanel2);\r
 396     linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
 397     editLinkButtons.add(newLink, null);\r
 398     editLinkButtons.add(editLink, null);\r
 399     editLinkButtons.add(deleteLink, null);\r
 400     linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
 401     linkScrollPane.getViewport().add(linkPanel2, null);\r
 402     linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
 403     linkPanel2.add(linkNameList, BorderLayout.WEST);\r
 404         okCancelPanel.add(ok);\r
 405         okCancelPanel.add(cancel);\r
 406     this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
 407 \r
 408         this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
 409     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 410         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 411         new Insets(0, 2, 4, 0), 5, 0));\r
 412     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
 413                                                   , GridBagConstraints.WEST,\r
 414                                                   GridBagConstraints.NONE,\r
 415                                                   new Insets(0, 0, 4, 0), 11, 6));\r
 416     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
 417         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 418         new Insets(16, 0, 0, 12), 359, -17));\r
 419     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
 420         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 421         new Insets(21, 0, 35, 12), 4, 6));\r
 422     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 423         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 424         new Insets(16, 0, 0, 0), 5, 1));\r
 425     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
 426         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 427         new Insets(0, 2, 4, 2), 54, 1));\r
 428     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 429         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 430         new Insets(0, 2, 4, 0), 263, 1));\r
 431     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 432         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 433         new Insets(15, 0, 0, 15), 307, 1));\r
 434 \r
 435 \r
 436     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
 437                                                  , GridBagConstraints.WEST,\r
 438                                                  GridBagConstraints.NONE,\r
 439                                                  new Insets(0, 2, 5, 185), 2,\r
 440                                                  -4));\r
 441     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
 442         dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
 443         gapSymbolCB.setRenderer(dlcr);\r
 444 \r
 445     tabbedPane.add(visualTab, "Visual");\r
 446     tabbedPane.add(connectTab,"Connections");\r
 447     tabbedPane.add(exportTab, "Output");\r
 448     jPanel11.add(jLabel1);\r
 449     jPanel11.add(blcjv);\r
 450     jPanel11.add(clustaljv);\r
 451     jPanel11.add(fastajv);\r
 452     jPanel11.add(msfjv);\r
 453     jPanel11.add(pfamjv);\r
 454     jPanel11.add(pileupjv);\r
 455     jPanel11.add(pirjv);\r
 456     exportTab.add(modellerOutput);\r
 457     tabbedPane.add(calcTab, "Calculations");\r
 458     calcTab.add(autoCalculateConsCheck);\r
 459     calcTab.add(padGaps);\r
 460 \r
 461     exportTab.add(epsLabel);\r
 462     exportTab.add(epsRendering);\r
 463     exportTab.add(jPanel11);\r
 464   }\r
 465 \r
 466     /**\r
 467      * DOCUMENT ME!\r
 468      *\r
 469      * @param e DOCUMENT ME!\r
 470      */\r
 471     public void ok_actionPerformed(ActionEvent e)\r
 472     {\r
 473     }\r
 474 \r
 475     /**\r
 476      * DOCUMENT ME!\r
 477      *\r
 478      * @param e DOCUMENT ME!\r
 479      */\r
 480     public void cancel_actionPerformed(ActionEvent e)\r
 481     {\r
 482     }\r
 483 \r
 484     /**\r
 485      * DOCUMENT ME!\r
 486      *\r
 487      * @param e DOCUMENT ME!\r
 488      */\r
 489     public void annotations_actionPerformed(ActionEvent e)\r
 490     {\r
 491     }\r
 492 \r
 493 \r
 494     /**\r
 495      * DOCUMENT ME!\r
 496      */\r
 497     public void startupFileTextfield_mouseClicked()\r
 498     {\r
 499     }\r
 500 \r
 501 \r
 502   public void newLink_actionPerformed(ActionEvent e) {\r
 503 \r
 504   }\r
 505 \r
 506   public void editLink_actionPerformed(ActionEvent e) {\r
 507 \r
 508   }\r
 509 \r
 510   public void deleteLink_actionPerformed(ActionEvent e) {\r
 511 \r
 512   }\r
 513 \r
 514   public void defaultBrowser_mouseClicked(MouseEvent e)\r
 515   {\r
 516 \r
 517   }\r
 518 \r
 519   public void linkURLList_keyTyped(KeyEvent e)\r
 520   {\r
 521 \r
 522   }\r
 523 \r
 524   public void useProxy_actionPerformed()\r
 525   {\r
 526       proxyServerTB.setEnabled(useProxy.isSelected());\r
 527       proxyPortTB.setEnabled(useProxy.isSelected());\r
 528   }\r
 529 }\r