src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.api.structures.JalviewStructureDisplayI;
  24 import jalview.util.MessageManager;
  25
  26 import java.awt.event.ActionEvent;
  27 import java.awt.event.ActionListener;
  28
  29 import javax.swing.ButtonGroup;
  30 import javax.swing.JInternalFrame;
  31 import javax.swing.JMenu;
  32 import javax.swing.JMenuBar;
  33 import javax.swing.JMenuItem;
  34 import javax.swing.JRadioButtonMenuItem;
  35
  36 public abstract class GStructureViewer extends JInternalFrame implements
  37         JalviewStructureDisplayI
  38 {
  39   // private AAStructureBindingModel bindingModel;
  40
  41   protected JMenu savemenu = new JMenu();
  42
  43   protected JMenu viewMenu = new JMenu();
  44
  45   protected JMenu chainMenu = new JMenu();
  46
  47   protected JMenu viewerActionMenu = new JMenu();
  48
  49   protected JMenuItem alignStructs = new JMenuItem();
  50
  51   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
  52
  53   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
  54
  55   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
  56
  57   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
  58
  59   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
  60
  61   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
  62
  63   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
  64
  65   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
  66
  67   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
  68
  69   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
  70
  71   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
  72
  73   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
  74
  75   protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
  76
  77   protected JMenuItem helpItem = new JMenuItem();
  78
  79   /**
  80    * Constructor
  81    */
  82   public GStructureViewer()
  83   {
  84     try
  85     {
  86       jbInit();
  87     } catch (Exception ex)
  88     {
  89       ex.printStackTrace();
  90     }
  91   }
  92
  93   private void jbInit() throws Exception
  94   {
  95     JMenuBar menuBar = new JMenuBar();
  96     this.setJMenuBar(menuBar);
  97
  98     JMenu fileMenu = new JMenu();
  99     fileMenu.setText(MessageManager.getString("action.file"));
 100
 101     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
 102     savemenu.setText(MessageManager.getString("action.save_as"));
 103
 104     JMenuItem pdbFile = new JMenuItem();
 105     pdbFile.setText(MessageManager.getString("label.pdb_file"));
 106     pdbFile.addActionListener(new ActionListener()
 107     {
 108       public void actionPerformed(ActionEvent actionEvent)
 109       {
 110         pdbFile_actionPerformed(actionEvent);
 111       }
 112     });
 113
 114     JMenuItem png = new JMenuItem();
 115     png.setText("PNG");
 116     png.addActionListener(new ActionListener()
 117     {
 118       public void actionPerformed(ActionEvent actionEvent)
 119       {
 120         png_actionPerformed(actionEvent);
 121       }
 122     });
 123
 124     JMenuItem eps = new JMenuItem();
 125     eps.setText("EPS");
 126     eps.addActionListener(new ActionListener()
 127     {
 128       public void actionPerformed(ActionEvent actionEvent)
 129       {
 130         eps_actionPerformed(actionEvent);
 131       }
 132     });
 133
 134     JMenuItem viewMapping = new JMenuItem();
 135     viewMapping.setText(MessageManager.getString("label.view_mapping"));
 136     viewMapping.addActionListener(new ActionListener()
 137     {
 138       public void actionPerformed(ActionEvent actionEvent)
 139       {
 140         viewMapping_actionPerformed(actionEvent);
 141       }
 142     });
 143     viewMenu.setText(MessageManager.getString("action.view"));
 144     chainMenu.setText(MessageManager.getString("action.show_chain"));
 145
 146     JMenu colourMenu = new JMenu();
 147     colourMenu.setText(MessageManager.getString("label.colours"));
 148
 149     JMenuItem backGround = new JMenuItem();
 150     backGround.setText(MessageManager.getString("label.background_colour")
 151             + "...");
 152     backGround.addActionListener(new ActionListener()
 153     {
 154       public void actionPerformed(ActionEvent actionEvent)
 155       {
 156         backGround_actionPerformed(actionEvent);
 157       }
 158     });
 159     seqColour.setSelected(false);
 160     seqColour.setText(MessageManager.getString("action.by_sequence"));
 161     seqColour.addActionListener(new ActionListener()
 162     {
 163       public void actionPerformed(ActionEvent actionEvent)
 164       {
 165         seqColour_actionPerformed(actionEvent);
 166       }
 167     });
 168     chainColour.setText(MessageManager.getString("action.by_chain"));
 169     chainColour.addActionListener(new ActionListener()
 170     {
 171       public void actionPerformed(ActionEvent actionEvent)
 172       {
 173         chainColour_actionPerformed(actionEvent);
 174       }
 175     });
 176     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 177     chargeColour.addActionListener(new ActionListener()
 178     {
 179       public void actionPerformed(ActionEvent actionEvent)
 180       {
 181         chargeColour_actionPerformed(actionEvent);
 182       }
 183     });
 184     zappoColour.setText(MessageManager.getString("label.zappo"));
 185     zappoColour.addActionListener(new ActionListener()
 186     {
 187       public void actionPerformed(ActionEvent actionEvent)
 188       {
 189         zappoColour_actionPerformed(actionEvent);
 190       }
 191     });
 192     taylorColour.setText(MessageManager.getString("label.taylor"));
 193     taylorColour.addActionListener(new ActionListener()
 194     {
 195       public void actionPerformed(ActionEvent actionEvent)
 196       {
 197         taylorColour_actionPerformed(actionEvent);
 198       }
 199     });
 200     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 201     hydroColour.addActionListener(new ActionListener()
 202     {
 203       public void actionPerformed(ActionEvent actionEvent)
 204       {
 205         hydroColour_actionPerformed(actionEvent);
 206       }
 207     });
 208     strandColour.setText(MessageManager
 209             .getString("label.strand_propensity"));
 210     strandColour.addActionListener(new ActionListener()
 211     {
 212       public void actionPerformed(ActionEvent actionEvent)
 213       {
 214         strandColour_actionPerformed(actionEvent);
 215       }
 216     });
 217     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 218     helixColour.addActionListener(new ActionListener()
 219     {
 220       public void actionPerformed(ActionEvent actionEvent)
 221       {
 222         helixColour_actionPerformed(actionEvent);
 223       }
 224     });
 225     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 226     turnColour.addActionListener(new ActionListener()
 227     {
 228       public void actionPerformed(ActionEvent actionEvent)
 229       {
 230         turnColour_actionPerformed(actionEvent);
 231       }
 232     });
 233     buriedColour.setText(MessageManager.getString("label.buried_index"));
 234     buriedColour.addActionListener(new ActionListener()
 235     {
 236       public void actionPerformed(ActionEvent actionEvent)
 237       {
 238         buriedColour_actionPerformed(actionEvent);
 239       }
 240     });
 241     purinePyrimidineColour.setText(MessageManager
 242             .getString("label.purine_pyrimidine"));
 243     purinePyrimidineColour.addActionListener(new ActionListener()
 244     {
 245       public void actionPerformed(ActionEvent actionEvent)
 246       {
 247         purinePyrimidineColour_actionPerformed(actionEvent);
 248       }
 249     });
 250
 251     userColour.setText(MessageManager.getString("action.user_defined"));
 252     userColour.addActionListener(new ActionListener()
 253     {
 254       public void actionPerformed(ActionEvent actionEvent)
 255       {
 256         userColour_actionPerformed(actionEvent);
 257       }
 258     });
 259     viewerColour.setSelected(false);
 260     viewerColour
 261             .setText(MessageManager.getString("label.colour_with_jmol"));
 262     viewerColour.setToolTipText(MessageManager
 263             .getString("label.let_jmol_manage_structure_colours"));
 264     viewerColour.addActionListener(new ActionListener()
 265     {
 266       public void actionPerformed(ActionEvent actionEvent)
 267       {
 268         viewerColour_actionPerformed(actionEvent);
 269       }
 270     });
 271
 272     JMenu helpMenu = new JMenu();
 273     helpMenu.setText(MessageManager.getString("action.help"));
 274     helpItem.setText(MessageManager.getString("label.jmol_help"));
 275     helpItem.addActionListener(new ActionListener()
 276     {
 277       public void actionPerformed(ActionEvent actionEvent)
 278       {
 279         showHelp_actionPerformed(actionEvent);
 280       }
 281     });
 282     alignStructs
 283             .setText(MessageManager.getString("label.align_structures"));
 284     alignStructs.addActionListener(new ActionListener()
 285     {
 286       public void actionPerformed(ActionEvent actionEvent)
 287       {
 288         alignStructs_actionPerformed(actionEvent);
 289       }
 290     });
 291     viewerActionMenu.setText(MessageManager.getString("label.jmol"));
 292     menuBar.add(fileMenu);
 293     menuBar.add(viewMenu);
 294     menuBar.add(colourMenu);
 295     menuBar.add(viewerActionMenu);
 296     viewerActionMenu.setVisible(false);
 297     menuBar.add(helpMenu);
 298     fileMenu.add(savemenu);
 299     fileMenu.add(viewMapping);
 300     savemenu.add(pdbFile);
 301     savemenu.add(png);
 302     savemenu.add(eps);
 303     viewMenu.add(chainMenu);
 304
 305     colourMenu.add(seqColour);
 306     colourMenu.add(chainColour);
 307     colourMenu.add(chargeColour);
 308     colourMenu.add(zappoColour);
 309     colourMenu.add(taylorColour);
 310     colourMenu.add(hydroColour);
 311     colourMenu.add(helixColour);
 312     colourMenu.add(strandColour);
 313     colourMenu.add(turnColour);
 314     colourMenu.add(buriedColour);
 315     colourMenu.add(purinePyrimidineColour);
 316     colourMenu.add(userColour);
 317     colourMenu.add(viewerColour);
 318     colourMenu.add(backGround);
 319
 320     ButtonGroup colourButtons = new ButtonGroup();
 321
 322     colourButtons.add(seqColour);
 323     colourButtons.add(chainColour);
 324     colourButtons.add(chargeColour);
 325     colourButtons.add(zappoColour);
 326     colourButtons.add(taylorColour);
 327     colourButtons.add(hydroColour);
 328     colourButtons.add(helixColour);
 329     colourButtons.add(strandColour);
 330     colourButtons.add(turnColour);
 331     colourButtons.add(buriedColour);
 332     colourButtons.add(userColour);
 333     colourButtons.add(viewerColour);
 334
 335     helpMenu.add(helpItem);
 336     viewerActionMenu.add(alignStructs);
 337   }
 338
 339   protected void viewerColour_actionPerformed(ActionEvent actionEvent)
 340   {
 341   }
 342
 343   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 344   {
 345   }
 346
 347   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 348   {
 349
 350   }
 351
 352   public void png_actionPerformed(ActionEvent actionEvent)
 353   {
 354
 355   }
 356
 357   public void eps_actionPerformed(ActionEvent actionEvent)
 358   {
 359
 360   }
 361
 362   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 363   {
 364
 365   }
 366
 367   public void seqColour_actionPerformed(ActionEvent actionEvent)
 368   {
 369
 370   }
 371
 372   public void chainColour_actionPerformed(ActionEvent actionEvent)
 373   {
 374
 375   }
 376
 377   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 378   {
 379
 380   }
 381
 382   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 383   {
 384
 385   }
 386
 387   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 388   {
 389
 390   }
 391
 392   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 393   {
 394
 395   }
 396
 397   public void helixColour_actionPerformed(ActionEvent actionEvent)
 398   {
 399
 400   }
 401
 402   public void strandColour_actionPerformed(ActionEvent actionEvent)
 403   {
 404
 405   }
 406
 407   public void turnColour_actionPerformed(ActionEvent actionEvent)
 408   {
 409
 410   }
 411
 412   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 413   {
 414
 415   }
 416
 417   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 418   {
 419
 420   }
 421
 422   public void userColour_actionPerformed(ActionEvent actionEvent)
 423   {
 424
 425   }
 426
 427   public void backGround_actionPerformed(ActionEvent actionEvent)
 428   {
 429
 430   }
 431
 432   public void showHelp_actionPerformed(ActionEvent actionEvent)
 433   {
 434
 435   }
 436
 437   // {
 438   // return bindingModel;
 439   // }
 440
 441   // public void setBindingModel(AAStructureBindingModel bindingModel)
 442   // {
 443   // this.bindingModel = bindingModel;
 444   // }
 445
 446 }