src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
   3  * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  */
  18 package jalview.jbgui;
  19
  20 import jalview.util.MessageManager;
  21
  22 import javax.swing.*;
  23 import java.awt.event.ActionListener;
  24 import java.awt.event.ActionEvent;
  25
  26 public class GStructureViewer extends JInternalFrame
  27 {
  28   public GStructureViewer()
  29   {
  30     try
  31     {
  32       jbInit();
  33     } catch (Exception ex)
  34     {
  35       ex.printStackTrace();
  36     }
  37   }
  38
  39   private void jbInit() throws Exception
  40   {
  41     this.setJMenuBar(menuBar);
  42     fileMenu.setText(MessageManager.getString("action.file"));
  43     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
  44     savemenu.setText(MessageManager.getString("action.save_as"));
  45     pdbFile.setText(MessageManager.getString("label.pdb_file"));
  46     pdbFile.addActionListener(new ActionListener()
  47     {
  48       public void actionPerformed(ActionEvent actionEvent)
  49       {
  50         pdbFile_actionPerformed(actionEvent);
  51       }
  52     });
  53     png.setText("PNG");
  54     png.addActionListener(new ActionListener()
  55     {
  56       public void actionPerformed(ActionEvent actionEvent)
  57       {
  58         png_actionPerformed(actionEvent);
  59       }
  60     });
  61     eps.setText("EPS");
  62     eps.addActionListener(new ActionListener()
  63     {
  64       public void actionPerformed(ActionEvent actionEvent)
  65       {
  66         eps_actionPerformed(actionEvent);
  67       }
  68     });
  69     viewMapping.setText(MessageManager.getString("label.view_mapping"));
  70     viewMapping.addActionListener(new ActionListener()
  71     {
  72       public void actionPerformed(ActionEvent actionEvent)
  73       {
  74         viewMapping_actionPerformed(actionEvent);
  75       }
  76     });
  77     viewMenu.setText(MessageManager.getString("action.view"));
  78     chainMenu.setText(MessageManager.getString("action.show_chain"));
  79     colourMenu.setText(MessageManager.getString("label.colours"));
  80     backGround.setText(MessageManager.getString("label.background_colour") + "...");
  81     backGround.addActionListener(new ActionListener()
  82     {
  83       public void actionPerformed(ActionEvent actionEvent)
  84       {
  85         backGround_actionPerformed(actionEvent);
  86       }
  87     });
  88     seqColour.setSelected(false);
  89     seqColour.setText(MessageManager.getString("action.by_sequence"));
  90     seqColour.addActionListener(new ActionListener()
  91     {
  92       public void actionPerformed(ActionEvent actionEvent)
  93       {
  94         seqColour_actionPerformed(actionEvent);
  95       }
  96     });
  97     chainColour.setText(MessageManager.getString("action.by_chain"));
  98     chainColour.addActionListener(new ActionListener()
  99     {
 100       public void actionPerformed(ActionEvent actionEvent)
 101       {
 102         chainColour_actionPerformed(actionEvent);
 103       }
 104     });
 105     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 106     chargeColour.addActionListener(new ActionListener()
 107     {
 108       public void actionPerformed(ActionEvent actionEvent)
 109       {
 110         chargeColour_actionPerformed(actionEvent);
 111       }
 112     });
 113     zappoColour.setText(MessageManager.getString("label.zappo"));
 114     zappoColour.addActionListener(new ActionListener()
 115     {
 116       public void actionPerformed(ActionEvent actionEvent)
 117       {
 118         zappoColour_actionPerformed(actionEvent);
 119       }
 120     });
 121     taylorColour.setText(MessageManager.getString("label.taylor"));
 122     taylorColour.addActionListener(new ActionListener()
 123     {
 124       public void actionPerformed(ActionEvent actionEvent)
 125       {
 126         taylorColour_actionPerformed(actionEvent);
 127       }
 128     });
 129     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 130     hydroColour.addActionListener(new ActionListener()
 131     {
 132       public void actionPerformed(ActionEvent actionEvent)
 133       {
 134         hydroColour_actionPerformed(actionEvent);
 135       }
 136     });
 137     strandColour.setText(MessageManager.getString("label.strand_propensity"));
 138     strandColour.addActionListener(new ActionListener()
 139     {
 140       public void actionPerformed(ActionEvent actionEvent)
 141       {
 142         strandColour_actionPerformed(actionEvent);
 143       }
 144     });
 145     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 146     helixColour.addActionListener(new ActionListener()
 147     {
 148       public void actionPerformed(ActionEvent actionEvent)
 149       {
 150         helixColour_actionPerformed(actionEvent);
 151       }
 152     });
 153     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 154     turnColour.addActionListener(new ActionListener()
 155     {
 156       public void actionPerformed(ActionEvent actionEvent)
 157       {
 158         turnColour_actionPerformed(actionEvent);
 159       }
 160     });
 161     buriedColour.setText(MessageManager.getString("label.buried_index"));
 162     buriedColour.addActionListener(new ActionListener()
 163     {
 164       public void actionPerformed(ActionEvent actionEvent)
 165       {
 166         buriedColour_actionPerformed(actionEvent);
 167       }
 168     });
 169     purinePyrimidineColour.setText(MessageManager.getString("label.purine_pyrimidine"));
 170     purinePyrimidineColour.addActionListener(new ActionListener()
 171     {
 172       public void actionPerformed(ActionEvent actionEvent)
 173       {
 174         purinePyrimidineColour_actionPerformed(actionEvent);
 175       }
 176     });
 177
 178     userColour.setText(MessageManager.getString("action.user_defined"));
 179     userColour.addActionListener(new ActionListener()
 180     {
 181       public void actionPerformed(ActionEvent actionEvent)
 182       {
 183         userColour_actionPerformed(actionEvent);
 184       }
 185     });
 186     jmolColour.setSelected(false);
 187     jmolColour.setText(MessageManager.getString("label.colour_with_jmol"));
 188     jmolColour.setToolTipText(MessageManager.getString("label.let_jmol_manage_structure_colours"));
 189     jmolColour.addActionListener(new ActionListener()
 190     {
 191       public void actionPerformed(ActionEvent actionEvent)
 192       {
 193         jmolColour_actionPerformed(actionEvent);
 194       }
 195     });
 196     helpMenu.setText(MessageManager.getString("action.help"));
 197     jmolHelp.setText(MessageManager.getString("label.jmol_help"));
 198     jmolHelp.addActionListener(new ActionListener()
 199     {
 200       public void actionPerformed(ActionEvent actionEvent)
 201       {
 202         jmolHelp_actionPerformed(actionEvent);
 203       }
 204     });
 205     alignStructs.setText(MessageManager.getString("label.align_structures"));
 206     alignStructs.addActionListener(new ActionListener()
 207     {
 208       public void actionPerformed(ActionEvent actionEvent)
 209       {
 210         alignStructs_actionPerformed(actionEvent);
 211       }
 212     });
 213     jmolActionMenu.setText(MessageManager.getString("label.jmol"));
 214     menuBar.add(fileMenu);
 215     menuBar.add(viewMenu);
 216     menuBar.add(colourMenu);
 217     menuBar.add(jmolActionMenu);
 218     jmolActionMenu.setVisible(false);
 219     menuBar.add(helpMenu);
 220     fileMenu.add(savemenu);
 221     fileMenu.add(viewMapping);
 222     savemenu.add(pdbFile);
 223     savemenu.add(png);
 224     savemenu.add(eps);
 225     viewMenu.add(chainMenu);
 226
 227     colourMenu.add(seqColour);
 228     colourMenu.add(chainColour);
 229     colourMenu.add(chargeColour);
 230     colourMenu.add(zappoColour);
 231     colourMenu.add(taylorColour);
 232     colourMenu.add(hydroColour);
 233     colourMenu.add(helixColour);
 234     colourMenu.add(strandColour);
 235     colourMenu.add(turnColour);
 236     colourMenu.add(buriedColour);
 237     colourMenu.add(purinePyrimidineColour);
 238     colourMenu.add(userColour);
 239     colourMenu.add(jmolColour);
 240     colourMenu.add(backGround);
 241
 242     colourButtons.add(seqColour);
 243     colourButtons.add(chainColour);
 244     colourButtons.add(chargeColour);
 245     colourButtons.add(zappoColour);
 246     colourButtons.add(taylorColour);
 247     colourButtons.add(hydroColour);
 248     colourButtons.add(helixColour);
 249     colourButtons.add(strandColour);
 250     colourButtons.add(turnColour);
 251     colourButtons.add(buriedColour);
 252     colourButtons.add(userColour);
 253     colourButtons.add(jmolColour);
 254
 255     helpMenu.add(jmolHelp);
 256     jmolActionMenu.add(alignStructs);
 257   }
 258
 259   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 260   {
 261   }
 262
 263   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 264   {
 265   }
 266
 267   JMenuBar menuBar = new JMenuBar();
 268
 269   JMenu fileMenu = new JMenu();
 270
 271   JMenu savemenu = new JMenu();
 272
 273   JMenuItem pdbFile = new JMenuItem();
 274
 275   JMenuItem png = new JMenuItem();
 276
 277   JMenuItem eps = new JMenuItem();
 278
 279   JMenuItem viewMapping = new JMenuItem();
 280
 281   protected JMenu viewMenu = new JMenu();
 282
 283   protected JMenu chainMenu = new JMenu();
 284
 285   JMenu jMenu1 = new JMenu();
 286
 287   protected JMenu colourMenu = new JMenu();
 288
 289   protected JMenu jmolActionMenu = new JMenu();
 290
 291   protected JMenuItem alignStructs = new JMenuItem();
 292
 293   JMenuItem backGround = new JMenuItem();
 294
 295   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 296
 297   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 298
 299   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 300
 301   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 302
 303   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 304
 305   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 306
 307   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 308
 309   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 310
 311   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 312
 313   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 314
 315   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 316
 317   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 318
 319   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 320
 321   protected ButtonGroup colourButtons = new ButtonGroup();
 322
 323   JMenu helpMenu = new JMenu();
 324
 325   JMenuItem jmolHelp = new JMenuItem();
 326
 327   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 328   {
 329
 330   }
 331
 332   public void png_actionPerformed(ActionEvent actionEvent)
 333   {
 334
 335   }
 336
 337   public void eps_actionPerformed(ActionEvent actionEvent)
 338   {
 339
 340   }
 341
 342   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 343   {
 344
 345   }
 346
 347   public void seqColour_actionPerformed(ActionEvent actionEvent)
 348   {
 349
 350   }
 351
 352   public void chainColour_actionPerformed(ActionEvent actionEvent)
 353   {
 354
 355   }
 356
 357   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 358   {
 359
 360   }
 361
 362   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 363   {
 364
 365   }
 366
 367   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 368   {
 369
 370   }
 371
 372   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 373   {
 374
 375   }
 376
 377   public void helixColour_actionPerformed(ActionEvent actionEvent)
 378   {
 379
 380   }
 381
 382   public void strandColour_actionPerformed(ActionEvent actionEvent)
 383   {
 384
 385   }
 386
 387   public void turnColour_actionPerformed(ActionEvent actionEvent)
 388   {
 389
 390   }
 391
 392   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 393   {
 394
 395   }
 396
 397   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 398   {
 399
 400   }
 401
 402   public void userColour_actionPerformed(ActionEvent actionEvent)
 403   {
 404
 405   }
 406
 407   public void backGround_actionPerformed(ActionEvent actionEvent)
 408   {
 409
 410   }
 411
 412   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 413   {
 414
 415   }
 416 }