src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  * The Jalview Authors are detailed in the 'AUTHORS' file.
  18  */
  19 package jalview.jbgui;
  20
  21 import javax.swing.*;
  22 import java.awt.event.ActionListener;
  23 import java.awt.event.ActionEvent;
  24
  25 public class GStructureViewer extends JInternalFrame
  26 {
  27   public GStructureViewer()
  28   {
  29     try
  30     {
  31       jbInit();
  32     } catch (Exception ex)
  33     {
  34       ex.printStackTrace();
  35     }
  36   }
  37
  38   private void jbInit() throws Exception
  39   {
  40     this.setJMenuBar(menuBar);
  41     fileMenu.setText("File");
  42     savemenu.setActionCommand("Save Image");
  43     savemenu.setText("Save As");
  44     pdbFile.setText("PDB File");
  45     pdbFile.addActionListener(new ActionListener()
  46     {
  47       public void actionPerformed(ActionEvent actionEvent)
  48       {
  49         pdbFile_actionPerformed(actionEvent);
  50       }
  51     });
  52     png.setText("PNG");
  53     png.addActionListener(new ActionListener()
  54     {
  55       public void actionPerformed(ActionEvent actionEvent)
  56       {
  57         png_actionPerformed(actionEvent);
  58       }
  59     });
  60     eps.setText("EPS");
  61     eps.addActionListener(new ActionListener()
  62     {
  63       public void actionPerformed(ActionEvent actionEvent)
  64       {
  65         eps_actionPerformed(actionEvent);
  66       }
  67     });
  68     viewMapping.setText("View Mapping");
  69     viewMapping.addActionListener(new ActionListener()
  70     {
  71       public void actionPerformed(ActionEvent actionEvent)
  72       {
  73         viewMapping_actionPerformed(actionEvent);
  74       }
  75     });
  76     viewMenu.setText("View");
  77     chainMenu.setText("Show Chain");
  78     colourMenu.setText("Colours");
  79     backGround.setText("Background Colour...");
  80     backGround.addActionListener(new ActionListener()
  81     {
  82       public void actionPerformed(ActionEvent actionEvent)
  83       {
  84         backGround_actionPerformed(actionEvent);
  85       }
  86     });
  87     seqColour.setSelected(false);
  88     seqColour.setText("By Sequence");
  89     seqColour.addActionListener(new ActionListener()
  90     {
  91       public void actionPerformed(ActionEvent actionEvent)
  92       {
  93         seqColour_actionPerformed(actionEvent);
  94       }
  95     });
  96     chainColour.setText("By Chain");
  97     chainColour.addActionListener(new ActionListener()
  98     {
  99       public void actionPerformed(ActionEvent actionEvent)
 100       {
 101         chainColour_actionPerformed(actionEvent);
 102       }
 103     });
 104     chargeColour.setText("Charge & Cysteine");
 105     chargeColour.addActionListener(new ActionListener()
 106     {
 107       public void actionPerformed(ActionEvent actionEvent)
 108       {
 109         chargeColour_actionPerformed(actionEvent);
 110       }
 111     });
 112     zappoColour.setText("Zappo");
 113     zappoColour.addActionListener(new ActionListener()
 114     {
 115       public void actionPerformed(ActionEvent actionEvent)
 116       {
 117         zappoColour_actionPerformed(actionEvent);
 118       }
 119     });
 120     taylorColour.setText("Taylor");
 121     taylorColour.addActionListener(new ActionListener()
 122     {
 123       public void actionPerformed(ActionEvent actionEvent)
 124       {
 125         taylorColour_actionPerformed(actionEvent);
 126       }
 127     });
 128     hydroColour.setText("Hydro");
 129     hydroColour.addActionListener(new ActionListener()
 130     {
 131       public void actionPerformed(ActionEvent actionEvent)
 132       {
 133         hydroColour_actionPerformed(actionEvent);
 134       }
 135     });
 136     strandColour.setText("Strand");
 137     strandColour.addActionListener(new ActionListener()
 138     {
 139       public void actionPerformed(ActionEvent actionEvent)
 140       {
 141         strandColour_actionPerformed(actionEvent);
 142       }
 143     });
 144     helixColour.setText("Helix Propensity");
 145     helixColour.addActionListener(new ActionListener()
 146     {
 147       public void actionPerformed(ActionEvent actionEvent)
 148       {
 149         helixColour_actionPerformed(actionEvent);
 150       }
 151     });
 152     turnColour.setText("Turn Propensity");
 153     turnColour.addActionListener(new ActionListener()
 154     {
 155       public void actionPerformed(ActionEvent actionEvent)
 156       {
 157         turnColour_actionPerformed(actionEvent);
 158       }
 159     });
 160     buriedColour.setText("Buried Index");
 161     buriedColour.addActionListener(new ActionListener()
 162     {
 163       public void actionPerformed(ActionEvent actionEvent)
 164       {
 165         buriedColour_actionPerformed(actionEvent);
 166       }
 167     });
 168     purinePyrimidineColour.setText("Purine/Pyrimidine");
 169     purinePyrimidineColour.addActionListener(new ActionListener()
 170     {
 171       public void actionPerformed(ActionEvent actionEvent)
 172       {
 173         purinePyrimidineColour_actionPerformed(actionEvent);
 174       }
 175     });
 176
 177     userColour.setText("User Defined ...");
 178     userColour.addActionListener(new ActionListener()
 179     {
 180       public void actionPerformed(ActionEvent actionEvent)
 181       {
 182         userColour_actionPerformed(actionEvent);
 183       }
 184     });
 185     jmolColour.setSelected(false);
 186     jmolColour.setText("Colour with Jmol");
 187     jmolColour.setToolTipText("Let Jmol manage structure colours.");
 188     jmolColour.addActionListener(new ActionListener()
 189     {
 190       public void actionPerformed(ActionEvent actionEvent)
 191       {
 192         jmolColour_actionPerformed(actionEvent);
 193       }
 194     });
 195     helpMenu.setText("Help");
 196     jmolHelp.setText("Jmol Help");
 197     jmolHelp.addActionListener(new ActionListener()
 198     {
 199       public void actionPerformed(ActionEvent actionEvent)
 200       {
 201         jmolHelp_actionPerformed(actionEvent);
 202       }
 203     });
 204     alignStructs.setText("Align structures");
 205     alignStructs.addActionListener(new ActionListener()
 206     {
 207       public void actionPerformed(ActionEvent actionEvent)
 208       {
 209         alignStructs_actionPerformed(actionEvent);
 210       }
 211     });
 212     jmolActionMenu.setText("Jmol");
 213     menuBar.add(fileMenu);
 214     menuBar.add(viewMenu);
 215     menuBar.add(colourMenu);
 216     menuBar.add(jmolActionMenu);
 217     jmolActionMenu.setVisible(false);
 218     menuBar.add(helpMenu);
 219     fileMenu.add(savemenu);
 220     fileMenu.add(viewMapping);
 221     savemenu.add(pdbFile);
 222     savemenu.add(png);
 223     savemenu.add(eps);
 224     viewMenu.add(chainMenu);
 225
 226     colourMenu.add(seqColour);
 227     colourMenu.add(chainColour);
 228     colourMenu.add(chargeColour);
 229     colourMenu.add(zappoColour);
 230     colourMenu.add(taylorColour);
 231     colourMenu.add(hydroColour);
 232     colourMenu.add(helixColour);
 233     colourMenu.add(strandColour);
 234     colourMenu.add(turnColour);
 235     colourMenu.add(buriedColour);
 236     colourMenu.add(purinePyrimidineColour);
 237     colourMenu.add(userColour);
 238     colourMenu.add(jmolColour);
 239     colourMenu.add(backGround);
 240
 241     colourButtons.add(seqColour);
 242     colourButtons.add(chainColour);
 243     colourButtons.add(chargeColour);
 244     colourButtons.add(zappoColour);
 245     colourButtons.add(taylorColour);
 246     colourButtons.add(hydroColour);
 247     colourButtons.add(helixColour);
 248     colourButtons.add(strandColour);
 249     colourButtons.add(turnColour);
 250     colourButtons.add(buriedColour);
 251     colourButtons.add(userColour);
 252     colourButtons.add(jmolColour);
 253
 254     helpMenu.add(jmolHelp);
 255     jmolActionMenu.add(alignStructs);
 256   }
 257
 258   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 259   {
 260   }
 261
 262   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 263   {
 264   }
 265
 266   JMenuBar menuBar = new JMenuBar();
 267
 268   JMenu fileMenu = new JMenu();
 269
 270   JMenu savemenu = new JMenu();
 271
 272   JMenuItem pdbFile = new JMenuItem();
 273
 274   JMenuItem png = new JMenuItem();
 275
 276   JMenuItem eps = new JMenuItem();
 277
 278   JMenuItem viewMapping = new JMenuItem();
 279
 280   protected JMenu viewMenu = new JMenu();
 281
 282   protected JMenu chainMenu = new JMenu();
 283
 284   JMenu jMenu1 = new JMenu();
 285
 286   protected JMenu colourMenu = new JMenu();
 287
 288   protected JMenu jmolActionMenu = new JMenu();
 289
 290   protected JMenuItem alignStructs = new JMenuItem();
 291
 292   JMenuItem backGround = new JMenuItem();
 293
 294   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 295
 296   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 297
 298   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 299
 300   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 301
 302   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 303
 304   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 305
 306   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 307
 308   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 309
 310   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 311
 312   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 313
 314   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 315
 316   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 317
 318   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 319
 320   protected ButtonGroup colourButtons = new ButtonGroup();
 321
 322   JMenu helpMenu = new JMenu();
 323
 324   JMenuItem jmolHelp = new JMenuItem();
 325
 326   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 327   {
 328
 329   }
 330
 331   public void png_actionPerformed(ActionEvent actionEvent)
 332   {
 333
 334   }
 335
 336   public void eps_actionPerformed(ActionEvent actionEvent)
 337   {
 338
 339   }
 340
 341   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 342   {
 343
 344   }
 345
 346   public void seqColour_actionPerformed(ActionEvent actionEvent)
 347   {
 348
 349   }
 350
 351   public void chainColour_actionPerformed(ActionEvent actionEvent)
 352   {
 353
 354   }
 355
 356   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 357   {
 358
 359   }
 360
 361   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 362   {
 363
 364   }
 365
 366   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 367   {
 368
 369   }
 370
 371   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 372   {
 373
 374   }
 375
 376   public void helixColour_actionPerformed(ActionEvent actionEvent)
 377   {
 378
 379   }
 380
 381   public void strandColour_actionPerformed(ActionEvent actionEvent)
 382   {
 383
 384   }
 385
 386   public void turnColour_actionPerformed(ActionEvent actionEvent)
 387   {
 388
 389   }
 390
 391   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 392   {
 393
 394   }
 395
 396   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 397   {
 398
 399   }
 400
 401   public void userColour_actionPerformed(ActionEvent actionEvent)
 402   {
 403
 404   }
 405
 406   public void backGround_actionPerformed(ActionEvent actionEvent)
 407   {
 408
 409   }
 410
 411   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 412   {
 413
 414   }
 415 }