src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
   3  * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  */
  18 package jalview.jbgui;
  19
  20 import javax.swing.*;
  21 import java.awt.event.ActionListener;
  22 import java.awt.event.ActionEvent;
  23
  24 public class GStructureViewer extends JInternalFrame
  25 {
  26   public GStructureViewer()
  27   {
  28     try
  29     {
  30       jbInit();
  31     } catch (Exception ex)
  32     {
  33       ex.printStackTrace();
  34     }
  35   }
  36
  37   private void jbInit() throws Exception
  38   {
  39     this.setJMenuBar(menuBar);
  40     fileMenu.setText("File");
  41     savemenu.setActionCommand("Save Image");
  42     savemenu.setText("Save As");
  43     pdbFile.setText("PDB File");
  44     pdbFile.addActionListener(new ActionListener()
  45     {
  46       public void actionPerformed(ActionEvent actionEvent)
  47       {
  48         pdbFile_actionPerformed(actionEvent);
  49       }
  50     });
  51     png.setText("PNG");
  52     png.addActionListener(new ActionListener()
  53     {
  54       public void actionPerformed(ActionEvent actionEvent)
  55       {
  56         png_actionPerformed(actionEvent);
  57       }
  58     });
  59     eps.setText("EPS");
  60     eps.addActionListener(new ActionListener()
  61     {
  62       public void actionPerformed(ActionEvent actionEvent)
  63       {
  64         eps_actionPerformed(actionEvent);
  65       }
  66     });
  67     viewMapping.setText("View Mapping");
  68     viewMapping.addActionListener(new ActionListener()
  69     {
  70       public void actionPerformed(ActionEvent actionEvent)
  71       {
  72         viewMapping_actionPerformed(actionEvent);
  73       }
  74     });
  75     viewMenu.setText("View");
  76     chainMenu.setText("Show Chain");
  77     colourMenu.setText("Colours");
  78     backGround.setText("Background Colour...");
  79     backGround.addActionListener(new ActionListener()
  80     {
  81       public void actionPerformed(ActionEvent actionEvent)
  82       {
  83         backGround_actionPerformed(actionEvent);
  84       }
  85     });
  86     seqColour.setSelected(false);
  87     seqColour.setText("By Sequence");
  88     seqColour.addActionListener(new ActionListener()
  89     {
  90       public void actionPerformed(ActionEvent actionEvent)
  91       {
  92         seqColour_actionPerformed(actionEvent);
  93       }
  94     });
  95     chainColour.setText("By Chain");
  96     chainColour.addActionListener(new ActionListener()
  97     {
  98       public void actionPerformed(ActionEvent actionEvent)
  99       {
 100         chainColour_actionPerformed(actionEvent);
 101       }
 102     });
 103     chargeColour.setText("Charge & Cysteine");
 104     chargeColour.addActionListener(new ActionListener()
 105     {
 106       public void actionPerformed(ActionEvent actionEvent)
 107       {
 108         chargeColour_actionPerformed(actionEvent);
 109       }
 110     });
 111     zappoColour.setText("Zappo");
 112     zappoColour.addActionListener(new ActionListener()
 113     {
 114       public void actionPerformed(ActionEvent actionEvent)
 115       {
 116         zappoColour_actionPerformed(actionEvent);
 117       }
 118     });
 119     taylorColour.setText("Taylor");
 120     taylorColour.addActionListener(new ActionListener()
 121     {
 122       public void actionPerformed(ActionEvent actionEvent)
 123       {
 124         taylorColour_actionPerformed(actionEvent);
 125       }
 126     });
 127     hydroColour.setText("Hydro");
 128     hydroColour.addActionListener(new ActionListener()
 129     {
 130       public void actionPerformed(ActionEvent actionEvent)
 131       {
 132         hydroColour_actionPerformed(actionEvent);
 133       }
 134     });
 135     strandColour.setText("Strand");
 136     strandColour.addActionListener(new ActionListener()
 137     {
 138       public void actionPerformed(ActionEvent actionEvent)
 139       {
 140         strandColour_actionPerformed(actionEvent);
 141       }
 142     });
 143     helixColour.setText("Helix Propensity");
 144     helixColour.addActionListener(new ActionListener()
 145     {
 146       public void actionPerformed(ActionEvent actionEvent)
 147       {
 148         helixColour_actionPerformed(actionEvent);
 149       }
 150     });
 151     turnColour.setText("Turn Propensity");
 152     turnColour.addActionListener(new ActionListener()
 153     {
 154       public void actionPerformed(ActionEvent actionEvent)
 155       {
 156         turnColour_actionPerformed(actionEvent);
 157       }
 158     });
 159     buriedColour.setText("Buried Index");
 160     buriedColour.addActionListener(new ActionListener()
 161     {
 162       public void actionPerformed(ActionEvent actionEvent)
 163       {
 164         buriedColour_actionPerformed(actionEvent);
 165       }
 166     });
 167     purinePyrimidineColour.setText("Purine/Pyrimidine");
 168     purinePyrimidineColour.addActionListener(new ActionListener()
 169     {
 170       public void actionPerformed(ActionEvent actionEvent)
 171       {
 172         purinePyrimidineColour_actionPerformed(actionEvent);
 173       }
 174     });
 175
 176     userColour.setText("User Defined ...");
 177     userColour.addActionListener(new ActionListener()
 178     {
 179       public void actionPerformed(ActionEvent actionEvent)
 180       {
 181         userColour_actionPerformed(actionEvent);
 182       }
 183     });
 184     jmolColour.setSelected(false);
 185     jmolColour.setText("Colour with Jmol");
 186     jmolColour.setToolTipText("Let Jmol manage structure colours.");
 187     jmolColour.addActionListener(new ActionListener()
 188     {
 189       public void actionPerformed(ActionEvent actionEvent)
 190       {
 191         jmolColour_actionPerformed(actionEvent);
 192       }
 193     });
 194     helpMenu.setText("Help");
 195     jmolHelp.setText("Jmol Help");
 196     jmolHelp.addActionListener(new ActionListener()
 197     {
 198       public void actionPerformed(ActionEvent actionEvent)
 199       {
 200         jmolHelp_actionPerformed(actionEvent);
 201       }
 202     });
 203     alignStructs.setText("Align structures");
 204     alignStructs.addActionListener(new ActionListener()
 205     {
 206       public void actionPerformed(ActionEvent actionEvent)
 207       {
 208         alignStructs_actionPerformed(actionEvent);
 209       }
 210     });
 211     jmolActionMenu.setText("Jmol");
 212     menuBar.add(fileMenu);
 213     menuBar.add(viewMenu);
 214     menuBar.add(colourMenu);
 215     menuBar.add(jmolActionMenu);
 216     jmolActionMenu.setVisible(false);
 217     menuBar.add(helpMenu);
 218     fileMenu.add(savemenu);
 219     fileMenu.add(viewMapping);
 220     savemenu.add(pdbFile);
 221     savemenu.add(png);
 222     savemenu.add(eps);
 223     viewMenu.add(chainMenu);
 224
 225     colourMenu.add(seqColour);
 226     colourMenu.add(chainColour);
 227     colourMenu.add(chargeColour);
 228     colourMenu.add(zappoColour);
 229     colourMenu.add(taylorColour);
 230     colourMenu.add(hydroColour);
 231     colourMenu.add(helixColour);
 232     colourMenu.add(strandColour);
 233     colourMenu.add(turnColour);
 234     colourMenu.add(buriedColour);
 235     colourMenu.add(purinePyrimidineColour);
 236     colourMenu.add(userColour);
 237     colourMenu.add(jmolColour);
 238     colourMenu.add(backGround);
 239
 240     colourButtons.add(seqColour);
 241     colourButtons.add(chainColour);
 242     colourButtons.add(chargeColour);
 243     colourButtons.add(zappoColour);
 244     colourButtons.add(taylorColour);
 245     colourButtons.add(hydroColour);
 246     colourButtons.add(helixColour);
 247     colourButtons.add(strandColour);
 248     colourButtons.add(turnColour);
 249     colourButtons.add(buriedColour);
 250     colourButtons.add(userColour);
 251     colourButtons.add(jmolColour);
 252
 253     helpMenu.add(jmolHelp);
 254     jmolActionMenu.add(alignStructs);
 255   }
 256
 257   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 258   {
 259   }
 260
 261   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 262   {
 263   }
 264
 265   JMenuBar menuBar = new JMenuBar();
 266
 267   JMenu fileMenu = new JMenu();
 268
 269   JMenu savemenu = new JMenu();
 270
 271   JMenuItem pdbFile = new JMenuItem();
 272
 273   JMenuItem png = new JMenuItem();
 274
 275   JMenuItem eps = new JMenuItem();
 276
 277   JMenuItem viewMapping = new JMenuItem();
 278
 279   protected JMenu viewMenu = new JMenu();
 280
 281   protected JMenu chainMenu = new JMenu();
 282
 283   JMenu jMenu1 = new JMenu();
 284
 285   protected JMenu colourMenu = new JMenu();
 286
 287   protected JMenu jmolActionMenu = new JMenu();
 288
 289   protected JMenuItem alignStructs = new JMenuItem();
 290
 291   JMenuItem backGround = new JMenuItem();
 292
 293   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 294
 295   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 296
 297   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 298
 299   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 300
 301   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 302
 303   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 304
 305   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 306
 307   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 308
 309   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 310
 311   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 312
 313   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 314
 315   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 316
 317   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 318
 319   protected ButtonGroup colourButtons = new ButtonGroup();
 320
 321   JMenu helpMenu = new JMenu();
 322
 323   JMenuItem jmolHelp = new JMenuItem();
 324
 325   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 326   {
 327
 328   }
 329
 330   public void png_actionPerformed(ActionEvent actionEvent)
 331   {
 332
 333   }
 334
 335   public void eps_actionPerformed(ActionEvent actionEvent)
 336   {
 337
 338   }
 339
 340   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 341   {
 342
 343   }
 344
 345   public void seqColour_actionPerformed(ActionEvent actionEvent)
 346   {
 347
 348   }
 349
 350   public void chainColour_actionPerformed(ActionEvent actionEvent)
 351   {
 352
 353   }
 354
 355   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 356   {
 357
 358   }
 359
 360   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 361   {
 362
 363   }
 364
 365   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 366   {
 367
 368   }
 369
 370   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 371   {
 372
 373   }
 374
 375   public void helixColour_actionPerformed(ActionEvent actionEvent)
 376   {
 377
 378   }
 379
 380   public void strandColour_actionPerformed(ActionEvent actionEvent)
 381   {
 382
 383   }
 384
 385   public void turnColour_actionPerformed(ActionEvent actionEvent)
 386   {
 387
 388   }
 389
 390   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 391   {
 392
 393   }
 394
 395   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 396   {
 397
 398   }
 399
 400   public void userColour_actionPerformed(ActionEvent actionEvent)
 401   {
 402
 403   }
 404
 405   public void backGround_actionPerformed(ActionEvent actionEvent)
 406   {
 407
 408   }
 409
 410   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 411   {
 412
 413   }
 414 }