src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.api.structures.JalviewStructureDisplayI;
  24 import jalview.util.MessageManager;
  25
  26 import java.awt.GridLayout;
  27 import java.awt.event.ActionEvent;
  28 import java.awt.event.ActionListener;
  29
  30 import javax.swing.ButtonGroup;
  31 import javax.swing.JInternalFrame;
  32 import javax.swing.JLabel;
  33 import javax.swing.JMenu;
  34 import javax.swing.JMenuBar;
  35 import javax.swing.JMenuItem;
  36 import javax.swing.JPanel;
  37 import javax.swing.JRadioButtonMenuItem;
  38
  39 public abstract class GStructureViewer extends JInternalFrame implements
  40         JalviewStructureDisplayI
  41 {
  42   // private AAStructureBindingModel bindingModel;
  43
  44   protected JMenu savemenu = new JMenu();
  45
  46   protected JMenu viewMenu = new JMenu();
  47
  48   protected JMenu chainMenu = new JMenu();
  49
  50   protected JMenu viewerActionMenu = new JMenu();
  51
  52   protected JMenuItem alignStructs = new JMenuItem();
  53
  54   protected JMenuItem fitToWindow = new JMenuItem();
  55
  56   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
  57
  58   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
  59
  60   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
  61
  62   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
  63
  64   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
  65
  66   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
  67
  68   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
  69
  70   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
  71
  72   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
  73
  74   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
  75
  76   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
  77
  78   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
  79
  80   protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
  81
  82   protected JMenuItem helpItem = new JMenuItem();
  83
  84   protected JLabel statusBar = new JLabel();
  85
  86   protected JPanel statusPanel = new JPanel();
  87
  88   /**
  89    * Constructor
  90    */
  91   public GStructureViewer()
  92   {
  93     try
  94     {
  95       jbInit();
  96     } catch (Exception ex)
  97     {
  98       ex.printStackTrace();
  99     }
 100   }
 101
 102   private void jbInit() throws Exception
 103   {
 104     JMenuBar menuBar = new JMenuBar();
 105     this.setJMenuBar(menuBar);
 106
 107     JMenu fileMenu = new JMenu();
 108     fileMenu.setText(MessageManager.getString("action.file"));
 109
 110     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
 111     savemenu.setText(MessageManager.getString("action.save_as"));
 112
 113     JMenuItem pdbFile = new JMenuItem();
 114     pdbFile.setText(MessageManager.getString("label.pdb_file"));
 115     pdbFile.addActionListener(new ActionListener()
 116     {
 117       public void actionPerformed(ActionEvent actionEvent)
 118       {
 119         pdbFile_actionPerformed(actionEvent);
 120       }
 121     });
 122
 123     JMenuItem png = new JMenuItem();
 124     png.setText("PNG");
 125     png.addActionListener(new ActionListener()
 126     {
 127       public void actionPerformed(ActionEvent actionEvent)
 128       {
 129         png_actionPerformed(actionEvent);
 130       }
 131     });
 132
 133     JMenuItem eps = new JMenuItem();
 134     eps.setText("EPS");
 135     eps.addActionListener(new ActionListener()
 136     {
 137       public void actionPerformed(ActionEvent actionEvent)
 138       {
 139         eps_actionPerformed(actionEvent);
 140       }
 141     });
 142
 143     JMenuItem viewMapping = new JMenuItem();
 144     viewMapping.setText(MessageManager.getString("label.view_mapping"));
 145     viewMapping.addActionListener(new ActionListener()
 146     {
 147       public void actionPerformed(ActionEvent actionEvent)
 148       {
 149         viewMapping_actionPerformed(actionEvent);
 150       }
 151     });
 152     viewMenu.setText(MessageManager.getString("action.view"));
 153
 154     chainMenu.setText(MessageManager.getString("action.show_chain"));
 155
 156     fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
 157     fitToWindow.addActionListener(new ActionListener()
 158     {
 159       public void actionPerformed(ActionEvent actionEvent)
 160       {
 161         fitToWindow_actionPerformed();
 162       }
 163     });
 164
 165     JMenu colourMenu = new JMenu();
 166     colourMenu.setText(MessageManager.getString("label.colours"));
 167
 168     JMenuItem backGround = new JMenuItem();
 169     backGround
 170             .setText(MessageManager.getString("action.background_colour"));
 171     backGround.addActionListener(new ActionListener()
 172     {
 173       public void actionPerformed(ActionEvent actionEvent)
 174       {
 175         backGround_actionPerformed(actionEvent);
 176       }
 177     });
 178     seqColour.setSelected(false);
 179     seqColour.setText(MessageManager.getString("action.by_sequence"));
 180     seqColour.addActionListener(new ActionListener()
 181     {
 182       public void actionPerformed(ActionEvent actionEvent)
 183       {
 184         seqColour_actionPerformed(actionEvent);
 185       }
 186     });
 187     chainColour.setText(MessageManager.getString("action.by_chain"));
 188     chainColour.addActionListener(new ActionListener()
 189     {
 190       public void actionPerformed(ActionEvent actionEvent)
 191       {
 192         chainColour_actionPerformed(actionEvent);
 193       }
 194     });
 195     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 196     chargeColour.addActionListener(new ActionListener()
 197     {
 198       public void actionPerformed(ActionEvent actionEvent)
 199       {
 200         chargeColour_actionPerformed(actionEvent);
 201       }
 202     });
 203     zappoColour.setText(MessageManager.getString("label.zappo"));
 204     zappoColour.addActionListener(new ActionListener()
 205     {
 206       public void actionPerformed(ActionEvent actionEvent)
 207       {
 208         zappoColour_actionPerformed(actionEvent);
 209       }
 210     });
 211     taylorColour.setText(MessageManager.getString("label.taylor"));
 212     taylorColour.addActionListener(new ActionListener()
 213     {
 214       public void actionPerformed(ActionEvent actionEvent)
 215       {
 216         taylorColour_actionPerformed(actionEvent);
 217       }
 218     });
 219     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 220     hydroColour.addActionListener(new ActionListener()
 221     {
 222       public void actionPerformed(ActionEvent actionEvent)
 223       {
 224         hydroColour_actionPerformed(actionEvent);
 225       }
 226     });
 227     strandColour.setText(MessageManager
 228             .getString("label.strand_propensity"));
 229     strandColour.addActionListener(new ActionListener()
 230     {
 231       public void actionPerformed(ActionEvent actionEvent)
 232       {
 233         strandColour_actionPerformed(actionEvent);
 234       }
 235     });
 236     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 237     helixColour.addActionListener(new ActionListener()
 238     {
 239       public void actionPerformed(ActionEvent actionEvent)
 240       {
 241         helixColour_actionPerformed(actionEvent);
 242       }
 243     });
 244     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 245     turnColour.addActionListener(new ActionListener()
 246     {
 247       public void actionPerformed(ActionEvent actionEvent)
 248       {
 249         turnColour_actionPerformed(actionEvent);
 250       }
 251     });
 252     buriedColour.setText(MessageManager.getString("label.buried_index"));
 253     buriedColour.addActionListener(new ActionListener()
 254     {
 255       public void actionPerformed(ActionEvent actionEvent)
 256       {
 257         buriedColour_actionPerformed(actionEvent);
 258       }
 259     });
 260     purinePyrimidineColour.setText(MessageManager
 261             .getString("label.purine_pyrimidine"));
 262     purinePyrimidineColour.addActionListener(new ActionListener()
 263     {
 264       public void actionPerformed(ActionEvent actionEvent)
 265       {
 266         purinePyrimidineColour_actionPerformed(actionEvent);
 267       }
 268     });
 269
 270     userColour.setText(MessageManager.getString("action.user_defined"));
 271     userColour.addActionListener(new ActionListener()
 272     {
 273       public void actionPerformed(ActionEvent actionEvent)
 274       {
 275         userColour_actionPerformed(actionEvent);
 276       }
 277     });
 278     viewerColour.setSelected(false);
 279     viewerColour
 280             .setText(MessageManager.getString("label.colour_with_jmol"));
 281     viewerColour.setToolTipText(MessageManager
 282             .getString("label.let_jmol_manage_structure_colours"));
 283     viewerColour.addActionListener(new ActionListener()
 284     {
 285       public void actionPerformed(ActionEvent actionEvent)
 286       {
 287         viewerColour_actionPerformed(actionEvent);
 288       }
 289     });
 290
 291     JMenu helpMenu = new JMenu();
 292     helpMenu.setText(MessageManager.getString("action.help"));
 293     helpItem.setText(MessageManager.getString("label.jmol_help"));
 294     helpItem.addActionListener(new ActionListener()
 295     {
 296       public void actionPerformed(ActionEvent actionEvent)
 297       {
 298         showHelp_actionPerformed(actionEvent);
 299       }
 300     });
 301     alignStructs
 302             .setText(MessageManager.getString("label.align_structures"));
 303     alignStructs.addActionListener(new ActionListener()
 304     {
 305       public void actionPerformed(ActionEvent actionEvent)
 306       {
 307         alignStructs_actionPerformed(actionEvent);
 308       }
 309     });
 310     viewerActionMenu.setText(MessageManager.getString("label.jmol"));
 311     menuBar.add(fileMenu);
 312     menuBar.add(viewMenu);
 313     menuBar.add(colourMenu);
 314     menuBar.add(viewerActionMenu);
 315     viewerActionMenu.setVisible(false);
 316     menuBar.add(helpMenu);
 317     fileMenu.add(savemenu);
 318     fileMenu.add(viewMapping);
 319     savemenu.add(pdbFile);
 320     savemenu.add(png);
 321     savemenu.add(eps);
 322     viewMenu.add(chainMenu);
 323
 324     colourMenu.add(seqColour);
 325     colourMenu.add(chainColour);
 326     colourMenu.add(chargeColour);
 327     colourMenu.add(zappoColour);
 328     colourMenu.add(taylorColour);
 329     colourMenu.add(hydroColour);
 330     colourMenu.add(helixColour);
 331     colourMenu.add(strandColour);
 332     colourMenu.add(turnColour);
 333     colourMenu.add(buriedColour);
 334     colourMenu.add(purinePyrimidineColour);
 335     colourMenu.add(userColour);
 336     colourMenu.add(viewerColour);
 337     colourMenu.add(backGround);
 338
 339     ButtonGroup colourButtons = new ButtonGroup();
 340
 341     colourButtons.add(seqColour);
 342     colourButtons.add(chainColour);
 343     colourButtons.add(chargeColour);
 344     colourButtons.add(zappoColour);
 345     colourButtons.add(taylorColour);
 346     colourButtons.add(hydroColour);
 347     colourButtons.add(helixColour);
 348     colourButtons.add(strandColour);
 349     colourButtons.add(turnColour);
 350     colourButtons.add(buriedColour);
 351     colourButtons.add(purinePyrimidineColour);
 352     colourButtons.add(userColour);
 353     colourButtons.add(viewerColour);
 354
 355     helpMenu.add(helpItem);
 356     viewerActionMenu.add(alignStructs);
 357
 358     statusPanel.setLayout(new GridLayout());
 359     this.getContentPane().add(statusPanel, java.awt.BorderLayout.SOUTH);
 360     statusPanel.add(statusBar, null);
 361   }
 362
 363   protected void fitToWindow_actionPerformed()
 364   {
 365   }
 366
 367   protected void viewerColour_actionPerformed(ActionEvent actionEvent)
 368   {
 369   }
 370
 371   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 372   {
 373   }
 374
 375   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 376   {
 377
 378   }
 379
 380   public void png_actionPerformed(ActionEvent actionEvent)
 381   {
 382
 383   }
 384
 385   public void eps_actionPerformed(ActionEvent actionEvent)
 386   {
 387
 388   }
 389
 390   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 391   {
 392
 393   }
 394
 395   public void seqColour_actionPerformed(ActionEvent actionEvent)
 396   {
 397
 398   }
 399
 400   public void chainColour_actionPerformed(ActionEvent actionEvent)
 401   {
 402
 403   }
 404
 405   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 406   {
 407
 408   }
 409
 410   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 411   {
 412
 413   }
 414
 415   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 416   {
 417
 418   }
 419
 420   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 421   {
 422
 423   }
 424
 425   public void helixColour_actionPerformed(ActionEvent actionEvent)
 426   {
 427
 428   }
 429
 430   public void strandColour_actionPerformed(ActionEvent actionEvent)
 431   {
 432
 433   }
 434
 435   public void turnColour_actionPerformed(ActionEvent actionEvent)
 436   {
 437
 438   }
 439
 440   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 441   {
 442
 443   }
 444
 445   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 446   {
 447
 448   }
 449
 450   public void userColour_actionPerformed(ActionEvent actionEvent)
 451   {
 452
 453   }
 454
 455   public void backGround_actionPerformed(ActionEvent actionEvent)
 456   {
 457
 458   }
 459
 460   public void showHelp_actionPerformed(ActionEvent actionEvent)
 461   {
 462
 463   }
 464
 465   // {
 466   // return bindingModel;
 467   // }
 468
 469   // public void setBindingModel(AAStructureBindingModel bindingModel)
 470   // {
 471   // this.bindingModel = bindingModel;
 472   // }
 473
 474 }