src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
   3  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  */
  18 package jalview.jbgui;
  19
  20 import javax.swing.*;
  21 import java.awt.event.ActionListener;
  22 import java.awt.event.ActionEvent;
  23
  24 public class GStructureViewer extends JInternalFrame
  25 {
  26   public GStructureViewer()
  27   {
  28     try
  29     {
  30       jbInit();
  31     } catch (Exception ex)
  32     {
  33       ex.printStackTrace();
  34     }
  35   }
  36
  37   private void jbInit() throws Exception
  38   {
  39     this.setJMenuBar(menuBar);
  40     fileMenu.setText("File");
  41     savemenu.setActionCommand("Save Image");
  42     savemenu.setText("Save As");
  43     pdbFile.setText("PDB File");
  44     pdbFile.addActionListener(new ActionListener()
  45     {
  46       public void actionPerformed(ActionEvent actionEvent)
  47       {
  48         pdbFile_actionPerformed(actionEvent);
  49       }
  50     });
  51     png.setText("PNG");
  52     png.addActionListener(new ActionListener()
  53     {
  54       public void actionPerformed(ActionEvent actionEvent)
  55       {
  56         png_actionPerformed(actionEvent);
  57       }
  58     });
  59     eps.setText("EPS");
  60     eps.addActionListener(new ActionListener()
  61     {
  62       public void actionPerformed(ActionEvent actionEvent)
  63       {
  64         eps_actionPerformed(actionEvent);
  65       }
  66     });
  67     viewMapping.setText("View Mapping");
  68     viewMapping.addActionListener(new ActionListener()
  69     {
  70       public void actionPerformed(ActionEvent actionEvent)
  71       {
  72         viewMapping_actionPerformed(actionEvent);
  73       }
  74     });
  75     viewMenu.setText("View");
  76     chainMenu.setText("Show Chain");
  77     colourMenu.setText("Colours");
  78     backGround.setText("Background Colour...");
  79     backGround.addActionListener(new ActionListener()
  80     {
  81       public void actionPerformed(ActionEvent actionEvent)
  82       {
  83         backGround_actionPerformed(actionEvent);
  84       }
  85     });
  86     seqColour.setSelected(false);
  87     seqColour.setText("By Sequence");
  88     seqColour.addActionListener(new ActionListener()
  89     {
  90       public void actionPerformed(ActionEvent actionEvent)
  91       {
  92         seqColour_actionPerformed(actionEvent);
  93       }
  94     });
  95     chainColour.setText("By Chain");
  96     chainColour.addActionListener(new ActionListener()
  97     {
  98       public void actionPerformed(ActionEvent actionEvent)
  99       {
 100         chainColour_actionPerformed(actionEvent);
 101       }
 102     });
 103     chargeColour.setText("Charge & Cysteine");
 104     chargeColour.addActionListener(new ActionListener()
 105     {
 106       public void actionPerformed(ActionEvent actionEvent)
 107       {
 108         chargeColour_actionPerformed(actionEvent);
 109       }
 110     });
 111     zappoColour.setText("Zappo");
 112     zappoColour.addActionListener(new ActionListener()
 113     {
 114       public void actionPerformed(ActionEvent actionEvent)
 115       {
 116         zappoColour_actionPerformed(actionEvent);
 117       }
 118     });
 119     taylorColour.setText("Taylor");
 120     taylorColour.addActionListener(new ActionListener()
 121     {
 122       public void actionPerformed(ActionEvent actionEvent)
 123       {
 124         taylorColour_actionPerformed(actionEvent);
 125       }
 126     });
 127     hydroColour.setText("Hydro");
 128     hydroColour.addActionListener(new ActionListener()
 129     {
 130       public void actionPerformed(ActionEvent actionEvent)
 131       {
 132         hydroColour_actionPerformed(actionEvent);
 133       }
 134     });
 135     strandColour.setText("Strand");
 136     strandColour.addActionListener(new ActionListener()
 137     {
 138       public void actionPerformed(ActionEvent actionEvent)
 139       {
 140         strandColour_actionPerformed(actionEvent);
 141       }
 142     });
 143     helixColour.setText("Helix Propensity");
 144     helixColour.addActionListener(new ActionListener()
 145     {
 146       public void actionPerformed(ActionEvent actionEvent)
 147       {
 148         helixColour_actionPerformed(actionEvent);
 149       }
 150     });
 151     turnColour.setText("Turn Propensity");
 152     turnColour.addActionListener(new ActionListener()
 153     {
 154       public void actionPerformed(ActionEvent actionEvent)
 155       {
 156         turnColour_actionPerformed(actionEvent);
 157       }
 158     });
 159     buriedColour.setText("Buried Index");
 160     buriedColour.addActionListener(new ActionListener()
 161     {
 162       public void actionPerformed(ActionEvent actionEvent)
 163       {
 164         buriedColour_actionPerformed(actionEvent);
 165       }
 166     });
 167     purinePyrimidineColour.setText("Purine/Pyrimidine");
 168     purinePyrimidineColour.addActionListener(new ActionListener()
 169     {
 170       public void actionPerformed(ActionEvent actionEvent)
 171       {
 172           purinePyrimidineColour_actionPerformed(actionEvent);
 173       }
 174     });
 175
 176     userColour.setText("User Defined ...");
 177     userColour.addActionListener(new ActionListener()
 178     {
 179       public void actionPerformed(ActionEvent actionEvent)
 180       {
 181         userColour_actionPerformed(actionEvent);
 182       }
 183     });
 184     jmolColour.setSelected(false);
 185     jmolColour.setText("Colour with Jmol");
 186     jmolColour.setToolTipText("Let Jmol manage structure colours.");
 187     jmolColour.addActionListener(new ActionListener()
 188     {
 189       public void actionPerformed(ActionEvent actionEvent)
 190       {
 191         jmolColour_actionPerformed(actionEvent);
 192       }
 193     }
 194     );
 195     helpMenu.setText("Help");
 196     jmolHelp.setText("Jmol Help");
 197     jmolHelp.addActionListener(new ActionListener()
 198     {
 199       public void actionPerformed(ActionEvent actionEvent)
 200       {
 201         jmolHelp_actionPerformed(actionEvent);
 202       }
 203     });
 204     alignStructs.setText("Align structures");
 205     alignStructs.addActionListener(new ActionListener()
 206     {
 207       public void actionPerformed(ActionEvent actionEvent)
 208       {
 209         alignStructs_actionPerformed(actionEvent);
 210       }
 211     });
 212     jmolActionMenu.setText("Jmol");
 213     menuBar.add(fileMenu);
 214     menuBar.add(viewMenu);
 215     menuBar.add(colourMenu);
 216     menuBar.add(jmolActionMenu);
 217     jmolActionMenu.setVisible(false);
 218     menuBar.add(helpMenu);
 219     fileMenu.add(savemenu);
 220     fileMenu.add(viewMapping);
 221     savemenu.add(pdbFile);
 222     savemenu.add(png);
 223     savemenu.add(eps);
 224     viewMenu.add(chainMenu);
 225
 226     colourMenu.add(seqColour);
 227     colourMenu.add(chainColour);
 228     colourMenu.add(chargeColour);
 229     colourMenu.add(zappoColour);
 230     colourMenu.add(taylorColour);
 231     colourMenu.add(hydroColour);
 232     colourMenu.add(helixColour);
 233     colourMenu.add(strandColour);
 234     colourMenu.add(turnColour);
 235     colourMenu.add(buriedColour);
 236     colourMenu.add(purinePyrimidineColour);
 237     colourMenu.add(userColour);
 238     colourMenu.add(jmolColour);
 239     colourMenu.add(backGround);
 240
 241     colourButtons.add(seqColour);
 242     colourButtons.add(chainColour);
 243     colourButtons.add(chargeColour);
 244     colourButtons.add(zappoColour);
 245     colourButtons.add(taylorColour);
 246     colourButtons.add(hydroColour);
 247     colourButtons.add(helixColour);
 248     colourButtons.add(strandColour);
 249     colourButtons.add(turnColour);
 250     colourButtons.add(buriedColour);
 251     colourButtons.add(userColour);
 252     colourButtons.add(jmolColour);
 253
 254     helpMenu.add(jmolHelp);
 255     jmolActionMenu.add(alignStructs);
 256   }
 257
 258   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 259   {
 260   }
 261
 262   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 263   {
 264   }
 265
 266   JMenuBar menuBar = new JMenuBar();
 267
 268   JMenu fileMenu = new JMenu();
 269
 270   JMenu savemenu = new JMenu();
 271
 272   JMenuItem pdbFile = new JMenuItem();
 273
 274   JMenuItem png = new JMenuItem();
 275
 276   JMenuItem eps = new JMenuItem();
 277
 278   JMenuItem viewMapping = new JMenuItem();
 279
 280   protected JMenu viewMenu = new JMenu();
 281
 282   protected JMenu chainMenu = new JMenu();
 283
 284   JMenu jMenu1 = new JMenu();
 285
 286   protected JMenu colourMenu = new JMenu();
 287
 288   protected JMenu jmolActionMenu = new JMenu();
 289
 290   protected JMenuItem alignStructs = new JMenuItem();
 291
 292   JMenuItem backGround = new JMenuItem();
 293
 294   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 295
 296   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 297
 298   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 299
 300   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 301
 302   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 303
 304   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 305
 306   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 307
 308   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 309
 310   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 311
 312   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 313
 314   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 315
 316
 317   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 318
 319   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 320
 321   protected ButtonGroup colourButtons = new ButtonGroup();
 322
 323   JMenu helpMenu = new JMenu();
 324
 325   JMenuItem jmolHelp = new JMenuItem();
 326
 327   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 328   {
 329
 330   }
 331
 332   public void png_actionPerformed(ActionEvent actionEvent)
 333   {
 334
 335   }
 336
 337   public void eps_actionPerformed(ActionEvent actionEvent)
 338   {
 339
 340   }
 341
 342   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 343   {
 344
 345   }
 346
 347   public void seqColour_actionPerformed(ActionEvent actionEvent)
 348   {
 349
 350   }
 351
 352   public void chainColour_actionPerformed(ActionEvent actionEvent)
 353   {
 354
 355   }
 356
 357   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 358   {
 359
 360   }
 361
 362   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 363   {
 364
 365   }
 366
 367   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 368   {
 369
 370   }
 371
 372   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 373   {
 374
 375   }
 376
 377   public void helixColour_actionPerformed(ActionEvent actionEvent)
 378   {
 379
 380   }
 381
 382   public void strandColour_actionPerformed(ActionEvent actionEvent)
 383   {
 384
 385   }
 386
 387   public void turnColour_actionPerformed(ActionEvent actionEvent)
 388   {
 389
 390   }
 391
 392   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 393   {
 394
 395   }
 396
 397   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 398   {
 399
 400   }
 401
 402   public void userColour_actionPerformed(ActionEvent actionEvent)
 403   {
 404
 405   }
 406
 407   public void backGround_actionPerformed(ActionEvent actionEvent)
 408   {
 409
 410   }
 411
 412   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 413   {
 414
 415   }
 416 }