src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.api.structures.JalviewStructureDisplayI;
  24 import jalview.util.MessageManager;
  25
  26 import java.awt.GridLayout;
  27 import java.awt.event.ActionEvent;
  28 import java.awt.event.ActionListener;
  29
  30 import javax.swing.ButtonGroup;
  31 import javax.swing.JInternalFrame;
  32 import javax.swing.JLabel;
  33 import javax.swing.JMenu;
  34 import javax.swing.JMenuBar;
  35 import javax.swing.JMenuItem;
  36 import javax.swing.JPanel;
  37 import javax.swing.JRadioButtonMenuItem;
  38
  39 public abstract class GStructureViewer extends JInternalFrame implements
  40         JalviewStructureDisplayI
  41 {
  42   // private AAStructureBindingModel bindingModel;
  43
  44   protected JMenu savemenu = new JMenu();
  45
  46   protected JMenu viewMenu = new JMenu();
  47
  48   protected JMenu chainMenu = new JMenu();
  49
  50   protected JMenu viewerActionMenu = new JMenu();
  51
  52   protected JMenuItem alignStructs = new JMenuItem();
  53
  54   protected JMenuItem fitToWindow = new JMenuItem();
  55
  56   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
  57
  58   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
  59
  60   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
  61
  62   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
  63
  64   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
  65
  66   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
  67
  68   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
  69
  70   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
  71
  72   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
  73
  74   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
  75
  76   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
  77
  78   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
  79
  80   protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
  81
  82   protected JMenuItem helpItem = new JMenuItem();
  83
  84   protected JLabel statusBar = new JLabel();
  85
  86   protected JPanel statusPanel = new JPanel();
  87
  88   /**
  89    * Constructor
  90    */
  91   public GStructureViewer()
  92   {
  93     try
  94     {
  95       jbInit();
  96     } catch (Exception ex)
  97     {
  98       ex.printStackTrace();
  99     }
 100   }
 101
 102   private void jbInit() throws Exception
 103   {
 104     JMenuBar menuBar = new JMenuBar();
 105     this.setJMenuBar(menuBar);
 106
 107     JMenu fileMenu = new JMenu();
 108     fileMenu.setText(MessageManager.getString("action.file"));
 109
 110     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
 111     savemenu.setText(MessageManager.getString("action.save_as"));
 112
 113     JMenuItem pdbFile = new JMenuItem();
 114     pdbFile.setText(MessageManager.getString("label.pdb_file"));
 115     pdbFile.addActionListener(new ActionListener()
 116     {
 117       @Override
 118       public void actionPerformed(ActionEvent actionEvent)
 119       {
 120         pdbFile_actionPerformed(actionEvent);
 121       }
 122     });
 123
 124     JMenuItem png = new JMenuItem();
 125     png.setText("PNG");
 126     png.addActionListener(new ActionListener()
 127     {
 128       @Override
 129       public void actionPerformed(ActionEvent actionEvent)
 130       {
 131         png_actionPerformed(actionEvent);
 132       }
 133     });
 134
 135     JMenuItem eps = new JMenuItem();
 136     eps.setText("EPS");
 137     eps.addActionListener(new ActionListener()
 138     {
 139       @Override
 140       public void actionPerformed(ActionEvent actionEvent)
 141       {
 142         eps_actionPerformed(actionEvent);
 143       }
 144     });
 145
 146     JMenuItem viewMapping = new JMenuItem();
 147     viewMapping.setText(MessageManager.getString("label.view_mapping"));
 148     viewMapping.addActionListener(new ActionListener()
 149     {
 150       @Override
 151       public void actionPerformed(ActionEvent actionEvent)
 152       {
 153         viewMapping_actionPerformed(actionEvent);
 154       }
 155     });
 156     viewMenu.setText(MessageManager.getString("action.view"));
 157
 158     chainMenu.setText(MessageManager.getString("action.show_chain"));
 159
 160     fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
 161     fitToWindow.addActionListener(new ActionListener()
 162     {
 163       @Override
 164       public void actionPerformed(ActionEvent actionEvent)
 165       {
 166         fitToWindow_actionPerformed();
 167       }
 168     });
 169
 170     JMenu colourMenu = new JMenu();
 171     colourMenu.setText(MessageManager.getString("label.colours"));
 172
 173     JMenuItem backGround = new JMenuItem();
 174     backGround
 175             .setText(MessageManager.getString("action.background_colour"));
 176     backGround.addActionListener(new ActionListener()
 177     {
 178       @Override
 179       public void actionPerformed(ActionEvent actionEvent)
 180       {
 181         backGround_actionPerformed(actionEvent);
 182       }
 183     });
 184     seqColour.setSelected(false);
 185     seqColour.setText(MessageManager.getString("action.by_sequence"));
 186     seqColour.addActionListener(new ActionListener()
 187     {
 188       @Override
 189       public void actionPerformed(ActionEvent actionEvent)
 190       {
 191         seqColour_actionPerformed(actionEvent);
 192       }
 193     });
 194     chainColour.setText(MessageManager.getString("action.by_chain"));
 195     chainColour.addActionListener(new ActionListener()
 196     {
 197       @Override
 198       public void actionPerformed(ActionEvent actionEvent)
 199       {
 200         chainColour_actionPerformed(actionEvent);
 201       }
 202     });
 203     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 204     chargeColour.addActionListener(new ActionListener()
 205     {
 206       @Override
 207       public void actionPerformed(ActionEvent actionEvent)
 208       {
 209         chargeColour_actionPerformed(actionEvent);
 210       }
 211     });
 212     zappoColour.setText(MessageManager.getString("label.zappo"));
 213     zappoColour.addActionListener(new ActionListener()
 214     {
 215       @Override
 216       public void actionPerformed(ActionEvent actionEvent)
 217       {
 218         zappoColour_actionPerformed(actionEvent);
 219       }
 220     });
 221     taylorColour.setText(MessageManager.getString("label.taylor"));
 222     taylorColour.addActionListener(new ActionListener()
 223     {
 224       @Override
 225       public void actionPerformed(ActionEvent actionEvent)
 226       {
 227         taylorColour_actionPerformed(actionEvent);
 228       }
 229     });
 230     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 231     hydroColour.addActionListener(new ActionListener()
 232     {
 233       @Override
 234       public void actionPerformed(ActionEvent actionEvent)
 235       {
 236         hydroColour_actionPerformed(actionEvent);
 237       }
 238     });
 239     strandColour.setText(MessageManager
 240             .getString("label.strand_propensity"));
 241     strandColour.addActionListener(new ActionListener()
 242     {
 243       @Override
 244       public void actionPerformed(ActionEvent actionEvent)
 245       {
 246         strandColour_actionPerformed(actionEvent);
 247       }
 248     });
 249     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 250     helixColour.addActionListener(new ActionListener()
 251     {
 252       @Override
 253       public void actionPerformed(ActionEvent actionEvent)
 254       {
 255         helixColour_actionPerformed(actionEvent);
 256       }
 257     });
 258     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 259     turnColour.addActionListener(new ActionListener()
 260     {
 261       @Override
 262       public void actionPerformed(ActionEvent actionEvent)
 263       {
 264         turnColour_actionPerformed(actionEvent);
 265       }
 266     });
 267     buriedColour.setText(MessageManager.getString("label.buried_index"));
 268     buriedColour.addActionListener(new ActionListener()
 269     {
 270       @Override
 271       public void actionPerformed(ActionEvent actionEvent)
 272       {
 273         buriedColour_actionPerformed(actionEvent);
 274       }
 275     });
 276     purinePyrimidineColour.setText(MessageManager
 277             .getString("label.purine_pyrimidine"));
 278     purinePyrimidineColour.addActionListener(new ActionListener()
 279     {
 280       @Override
 281       public void actionPerformed(ActionEvent actionEvent)
 282       {
 283         purinePyrimidineColour_actionPerformed(actionEvent);
 284       }
 285     });
 286
 287     userColour.setText(MessageManager.getString("action.user_defined"));
 288     userColour.addActionListener(new ActionListener()
 289     {
 290       @Override
 291       public void actionPerformed(ActionEvent actionEvent)
 292       {
 293         userColour_actionPerformed(actionEvent);
 294       }
 295     });
 296     viewerColour.setSelected(false);
 297     viewerColour
 298             .setText(MessageManager.getString("label.colour_with_jmol"));
 299     viewerColour.setToolTipText(MessageManager
 300             .getString("label.let_jmol_manage_structure_colours"));
 301     viewerColour.addActionListener(new ActionListener()
 302     {
 303       @Override
 304       public void actionPerformed(ActionEvent actionEvent)
 305       {
 306         viewerColour_actionPerformed(actionEvent);
 307       }
 308     });
 309
 310     JMenu helpMenu = new JMenu();
 311     helpMenu.setText(MessageManager.getString("action.help"));
 312     helpItem.setText(MessageManager.getString("label.jmol_help"));
 313     helpItem.addActionListener(new ActionListener()
 314     {
 315       @Override
 316       public void actionPerformed(ActionEvent actionEvent)
 317       {
 318         showHelp_actionPerformed(actionEvent);
 319       }
 320     });
 321     alignStructs
 322             .setText(MessageManager.getString("label.align_structures"));
 323     alignStructs.addActionListener(new ActionListener()
 324     {
 325       @Override
 326       public void actionPerformed(ActionEvent actionEvent)
 327       {
 328         alignStructs_actionPerformed(actionEvent);
 329       }
 330     });
 331     viewerActionMenu.setText(MessageManager.getString("label.jmol"));
 332     menuBar.add(fileMenu);
 333     menuBar.add(viewMenu);
 334     menuBar.add(colourMenu);
 335     menuBar.add(viewerActionMenu);
 336     viewerActionMenu.setVisible(false);
 337     menuBar.add(helpMenu);
 338     fileMenu.add(savemenu);
 339     fileMenu.add(viewMapping);
 340     savemenu.add(pdbFile);
 341     savemenu.add(png);
 342     savemenu.add(eps);
 343     viewMenu.add(chainMenu);
 344
 345     colourMenu.add(seqColour);
 346     colourMenu.add(chainColour);
 347     colourMenu.add(chargeColour);
 348     colourMenu.add(zappoColour);
 349     colourMenu.add(taylorColour);
 350     colourMenu.add(hydroColour);
 351     colourMenu.add(helixColour);
 352     colourMenu.add(strandColour);
 353     colourMenu.add(turnColour);
 354     colourMenu.add(buriedColour);
 355     colourMenu.add(purinePyrimidineColour);
 356     colourMenu.add(userColour);
 357     colourMenu.add(viewerColour);
 358     colourMenu.add(backGround);
 359
 360     ButtonGroup colourButtons = new ButtonGroup();
 361
 362     colourButtons.add(seqColour);
 363     colourButtons.add(chainColour);
 364     colourButtons.add(chargeColour);
 365     colourButtons.add(zappoColour);
 366     colourButtons.add(taylorColour);
 367     colourButtons.add(hydroColour);
 368     colourButtons.add(helixColour);
 369     colourButtons.add(strandColour);
 370     colourButtons.add(turnColour);
 371     colourButtons.add(buriedColour);
 372     colourButtons.add(purinePyrimidineColour);
 373     colourButtons.add(userColour);
 374     colourButtons.add(viewerColour);
 375
 376     helpMenu.add(helpItem);
 377     viewerActionMenu.add(alignStructs);
 378
 379     statusPanel.setLayout(new GridLayout());
 380     this.getContentPane().add(statusPanel, java.awt.BorderLayout.SOUTH);
 381     statusPanel.add(statusBar, null);
 382   }
 383
 384   protected void fitToWindow_actionPerformed()
 385   {
 386   }
 387
 388   protected void highlightSelection_actionPerformed()
 389   {
 390   }
 391
 392   protected void viewerColour_actionPerformed(ActionEvent actionEvent)
 393   {
 394   }
 395
 396   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 397   {
 398   }
 399
 400   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 401   {
 402
 403   }
 404
 405   public void png_actionPerformed(ActionEvent actionEvent)
 406   {
 407
 408   }
 409
 410   public void eps_actionPerformed(ActionEvent actionEvent)
 411   {
 412
 413   }
 414
 415   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 416   {
 417
 418   }
 419
 420   public void seqColour_actionPerformed(ActionEvent actionEvent)
 421   {
 422
 423   }
 424
 425   public void chainColour_actionPerformed(ActionEvent actionEvent)
 426   {
 427
 428   }
 429
 430   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 431   {
 432
 433   }
 434
 435   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 436   {
 437
 438   }
 439
 440   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 441   {
 442
 443   }
 444
 445   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 446   {
 447
 448   }
 449
 450   public void helixColour_actionPerformed(ActionEvent actionEvent)
 451   {
 452
 453   }
 454
 455   public void strandColour_actionPerformed(ActionEvent actionEvent)
 456   {
 457
 458   }
 459
 460   public void turnColour_actionPerformed(ActionEvent actionEvent)
 461   {
 462
 463   }
 464
 465   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 466   {
 467
 468   }
 469
 470   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 471   {
 472
 473   }
 474
 475   public void userColour_actionPerformed(ActionEvent actionEvent)
 476   {
 477
 478   }
 479
 480   public void backGround_actionPerformed(ActionEvent actionEvent)
 481   {
 482
 483   }
 484
 485   public void showHelp_actionPerformed(ActionEvent actionEvent)
 486   {
 487
 488   }
 489
 490   // {
 491   // return bindingModel;
 492   // }
 493
 494   // public void setBindingModel(AAStructureBindingModel bindingModel)
 495   // {
 496   // this.bindingModel = bindingModel;
 497   // }
 498
 499 }