src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import javax.swing.*;
  26 import java.awt.event.ActionListener;
  27 import java.awt.event.ActionEvent;
  28
  29 public class GStructureViewer extends JInternalFrame
  30 {
  31   public GStructureViewer()
  32   {
  33     try
  34     {
  35       jbInit();
  36     } catch (Exception ex)
  37     {
  38       ex.printStackTrace();
  39     }
  40   }
  41
  42   private void jbInit() throws Exception
  43   {
  44     this.setJMenuBar(menuBar);
  45     fileMenu.setText(MessageManager.getString("action.file"));
  46     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
  47     savemenu.setText(MessageManager.getString("action.save_as"));
  48     pdbFile.setText(MessageManager.getString("label.pdb_file"));
  49     pdbFile.addActionListener(new ActionListener()
  50     {
  51       public void actionPerformed(ActionEvent actionEvent)
  52       {
  53         pdbFile_actionPerformed(actionEvent);
  54       }
  55     });
  56     png.setText("PNG");
  57     png.addActionListener(new ActionListener()
  58     {
  59       public void actionPerformed(ActionEvent actionEvent)
  60       {
  61         png_actionPerformed(actionEvent);
  62       }
  63     });
  64     eps.setText("EPS");
  65     eps.addActionListener(new ActionListener()
  66     {
  67       public void actionPerformed(ActionEvent actionEvent)
  68       {
  69         eps_actionPerformed(actionEvent);
  70       }
  71     });
  72     viewMapping.setText(MessageManager.getString("label.view_mapping"));
  73     viewMapping.addActionListener(new ActionListener()
  74     {
  75       public void actionPerformed(ActionEvent actionEvent)
  76       {
  77         viewMapping_actionPerformed(actionEvent);
  78       }
  79     });
  80     viewMenu.setText(MessageManager.getString("action.view"));
  81     chainMenu.setText(MessageManager.getString("action.show_chain"));
  82     colourMenu.setText(MessageManager.getString("label.colours"));
  83     backGround.setText(MessageManager.getString("label.background_colour")
  84             + "...");
  85     backGround.addActionListener(new ActionListener()
  86     {
  87       public void actionPerformed(ActionEvent actionEvent)
  88       {
  89         backGround_actionPerformed(actionEvent);
  90       }
  91     });
  92     seqColour.setSelected(false);
  93     seqColour.setText(MessageManager.getString("action.by_sequence"));
  94     seqColour.addActionListener(new ActionListener()
  95     {
  96       public void actionPerformed(ActionEvent actionEvent)
  97       {
  98         seqColour_actionPerformed(actionEvent);
  99       }
 100     });
 101     chainColour.setText(MessageManager.getString("action.by_chain"));
 102     chainColour.addActionListener(new ActionListener()
 103     {
 104       public void actionPerformed(ActionEvent actionEvent)
 105       {
 106         chainColour_actionPerformed(actionEvent);
 107       }
 108     });
 109     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 110     chargeColour.addActionListener(new ActionListener()
 111     {
 112       public void actionPerformed(ActionEvent actionEvent)
 113       {
 114         chargeColour_actionPerformed(actionEvent);
 115       }
 116     });
 117     zappoColour.setText(MessageManager.getString("label.zappo"));
 118     zappoColour.addActionListener(new ActionListener()
 119     {
 120       public void actionPerformed(ActionEvent actionEvent)
 121       {
 122         zappoColour_actionPerformed(actionEvent);
 123       }
 124     });
 125     taylorColour.setText(MessageManager.getString("label.taylor"));
 126     taylorColour.addActionListener(new ActionListener()
 127     {
 128       public void actionPerformed(ActionEvent actionEvent)
 129       {
 130         taylorColour_actionPerformed(actionEvent);
 131       }
 132     });
 133     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 134     hydroColour.addActionListener(new ActionListener()
 135     {
 136       public void actionPerformed(ActionEvent actionEvent)
 137       {
 138         hydroColour_actionPerformed(actionEvent);
 139       }
 140     });
 141     strandColour.setText(MessageManager
 142             .getString("label.strand_propensity"));
 143     strandColour.addActionListener(new ActionListener()
 144     {
 145       public void actionPerformed(ActionEvent actionEvent)
 146       {
 147         strandColour_actionPerformed(actionEvent);
 148       }
 149     });
 150     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 151     helixColour.addActionListener(new ActionListener()
 152     {
 153       public void actionPerformed(ActionEvent actionEvent)
 154       {
 155         helixColour_actionPerformed(actionEvent);
 156       }
 157     });
 158     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 159     turnColour.addActionListener(new ActionListener()
 160     {
 161       public void actionPerformed(ActionEvent actionEvent)
 162       {
 163         turnColour_actionPerformed(actionEvent);
 164       }
 165     });
 166     buriedColour.setText(MessageManager.getString("label.buried_index"));
 167     buriedColour.addActionListener(new ActionListener()
 168     {
 169       public void actionPerformed(ActionEvent actionEvent)
 170       {
 171         buriedColour_actionPerformed(actionEvent);
 172       }
 173     });
 174     purinePyrimidineColour.setText(MessageManager
 175             .getString("label.purine_pyrimidine"));
 176     purinePyrimidineColour.addActionListener(new ActionListener()
 177     {
 178       public void actionPerformed(ActionEvent actionEvent)
 179       {
 180         purinePyrimidineColour_actionPerformed(actionEvent);
 181       }
 182     });
 183
 184     userColour.setText(MessageManager.getString("action.user_defined"));
 185     userColour.addActionListener(new ActionListener()
 186     {
 187       public void actionPerformed(ActionEvent actionEvent)
 188       {
 189         userColour_actionPerformed(actionEvent);
 190       }
 191     });
 192     jmolColour.setSelected(false);
 193     jmolColour.setText(MessageManager.getString("label.colour_with_jmol"));
 194     jmolColour.setToolTipText(MessageManager
 195             .getString("label.let_jmol_manage_structure_colours"));
 196     jmolColour.addActionListener(new ActionListener()
 197     {
 198       public void actionPerformed(ActionEvent actionEvent)
 199       {
 200         jmolColour_actionPerformed(actionEvent);
 201       }
 202     });
 203     helpMenu.setText(MessageManager.getString("action.help"));
 204     jmolHelp.setText(MessageManager.getString("label.jmol_help"));
 205     jmolHelp.addActionListener(new ActionListener()
 206     {
 207       public void actionPerformed(ActionEvent actionEvent)
 208       {
 209         jmolHelp_actionPerformed(actionEvent);
 210       }
 211     });
 212     alignStructs
 213             .setText(MessageManager.getString("label.align_structures"));
 214     alignStructs.addActionListener(new ActionListener()
 215     {
 216       public void actionPerformed(ActionEvent actionEvent)
 217       {
 218         alignStructs_actionPerformed(actionEvent);
 219       }
 220     });
 221     jmolActionMenu.setText(MessageManager.getString("label.jmol"));
 222     menuBar.add(fileMenu);
 223     menuBar.add(viewMenu);
 224     menuBar.add(colourMenu);
 225     menuBar.add(jmolActionMenu);
 226     jmolActionMenu.setVisible(false);
 227     menuBar.add(helpMenu);
 228     fileMenu.add(savemenu);
 229     fileMenu.add(viewMapping);
 230     savemenu.add(pdbFile);
 231     savemenu.add(png);
 232     savemenu.add(eps);
 233     viewMenu.add(chainMenu);
 234
 235     colourMenu.add(seqColour);
 236     colourMenu.add(chainColour);
 237     colourMenu.add(chargeColour);
 238     colourMenu.add(zappoColour);
 239     colourMenu.add(taylorColour);
 240     colourMenu.add(hydroColour);
 241     colourMenu.add(helixColour);
 242     colourMenu.add(strandColour);
 243     colourMenu.add(turnColour);
 244     colourMenu.add(buriedColour);
 245     colourMenu.add(purinePyrimidineColour);
 246     colourMenu.add(userColour);
 247     colourMenu.add(jmolColour);
 248     colourMenu.add(backGround);
 249
 250     colourButtons.add(seqColour);
 251     colourButtons.add(chainColour);
 252     colourButtons.add(chargeColour);
 253     colourButtons.add(zappoColour);
 254     colourButtons.add(taylorColour);
 255     colourButtons.add(hydroColour);
 256     colourButtons.add(helixColour);
 257     colourButtons.add(strandColour);
 258     colourButtons.add(turnColour);
 259     colourButtons.add(buriedColour);
 260     colourButtons.add(userColour);
 261     colourButtons.add(jmolColour);
 262
 263     helpMenu.add(jmolHelp);
 264     jmolActionMenu.add(alignStructs);
 265   }
 266
 267   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 268   {
 269   }
 270
 271   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 272   {
 273   }
 274
 275   JMenuBar menuBar = new JMenuBar();
 276
 277   JMenu fileMenu = new JMenu();
 278
 279   JMenu savemenu = new JMenu();
 280
 281   JMenuItem pdbFile = new JMenuItem();
 282
 283   JMenuItem png = new JMenuItem();
 284
 285   JMenuItem eps = new JMenuItem();
 286
 287   JMenuItem viewMapping = new JMenuItem();
 288
 289   protected JMenu viewMenu = new JMenu();
 290
 291   protected JMenu chainMenu = new JMenu();
 292
 293   JMenu jMenu1 = new JMenu();
 294
 295   protected JMenu colourMenu = new JMenu();
 296
 297   protected JMenu jmolActionMenu = new JMenu();
 298
 299   protected JMenuItem alignStructs = new JMenuItem();
 300
 301   JMenuItem backGround = new JMenuItem();
 302
 303   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 304
 305   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 306
 307   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 308
 309   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 310
 311   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 312
 313   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 314
 315   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 316
 317   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 318
 319   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 320
 321   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 322
 323   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 324
 325   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 326
 327   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 328
 329   protected ButtonGroup colourButtons = new ButtonGroup();
 330
 331   JMenu helpMenu = new JMenu();
 332
 333   JMenuItem jmolHelp = new JMenuItem();
 334
 335   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 336   {
 337
 338   }
 339
 340   public void png_actionPerformed(ActionEvent actionEvent)
 341   {
 342
 343   }
 344
 345   public void eps_actionPerformed(ActionEvent actionEvent)
 346   {
 347
 348   }
 349
 350   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 351   {
 352
 353   }
 354
 355   public void seqColour_actionPerformed(ActionEvent actionEvent)
 356   {
 357
 358   }
 359
 360   public void chainColour_actionPerformed(ActionEvent actionEvent)
 361   {
 362
 363   }
 364
 365   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 366   {
 367
 368   }
 369
 370   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 371   {
 372
 373   }
 374
 375   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 376   {
 377
 378   }
 379
 380   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 381   {
 382
 383   }
 384
 385   public void helixColour_actionPerformed(ActionEvent actionEvent)
 386   {
 387
 388   }
 389
 390   public void strandColour_actionPerformed(ActionEvent actionEvent)
 391   {
 392
 393   }
 394
 395   public void turnColour_actionPerformed(ActionEvent actionEvent)
 396   {
 397
 398   }
 399
 400   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 401   {
 402
 403   }
 404
 405   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 406   {
 407
 408   }
 409
 410   public void userColour_actionPerformed(ActionEvent actionEvent)
 411   {
 412
 413   }
 414
 415   public void backGround_actionPerformed(ActionEvent actionEvent)
 416   {
 417
 418   }
 419
 420   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 421   {
 422
 423   }
 424 }