src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import javax.swing.*;
  26 import java.awt.event.ActionListener;
  27 import java.awt.event.ActionEvent;
  28
  29 public class GStructureViewer extends JInternalFrame
  30 {
  31   public GStructureViewer()
  32   {
  33     try
  34     {
  35       jbInit();
  36     } catch (Exception ex)
  37     {
  38       ex.printStackTrace();
  39     }
  40   }
  41
  42   private void jbInit() throws Exception
  43   {
  44     this.setJMenuBar(menuBar);
  45     fileMenu.setText(MessageManager.getString("action.file"));
  46     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
  47     savemenu.setText(MessageManager.getString("action.save_as"));
  48     pdbFile.setText(MessageManager.getString("label.pdb_file"));
  49     pdbFile.addActionListener(new ActionListener()
  50     {
  51       public void actionPerformed(ActionEvent actionEvent)
  52       {
  53         pdbFile_actionPerformed(actionEvent);
  54       }
  55     });
  56     png.setText("PNG");
  57     png.addActionListener(new ActionListener()
  58     {
  59       public void actionPerformed(ActionEvent actionEvent)
  60       {
  61         png_actionPerformed(actionEvent);
  62       }
  63     });
  64     eps.setText("EPS");
  65     eps.addActionListener(new ActionListener()
  66     {
  67       public void actionPerformed(ActionEvent actionEvent)
  68       {
  69         eps_actionPerformed(actionEvent);
  70       }
  71     });
  72     viewMapping.setText(MessageManager.getString("label.view_mapping"));
  73     viewMapping.addActionListener(new ActionListener()
  74     {
  75       public void actionPerformed(ActionEvent actionEvent)
  76       {
  77         viewMapping_actionPerformed(actionEvent);
  78       }
  79     });
  80     viewMenu.setText(MessageManager.getString("action.view"));
  81     chainMenu.setText(MessageManager.getString("action.show_chain"));
  82     colourMenu.setText(MessageManager.getString("label.colours"));
  83     backGround.setText(MessageManager.getString("label.background_colour") + "...");
  84     backGround.addActionListener(new ActionListener()
  85     {
  86       public void actionPerformed(ActionEvent actionEvent)
  87       {
  88         backGround_actionPerformed(actionEvent);
  89       }
  90     });
  91     seqColour.setSelected(false);
  92     seqColour.setText(MessageManager.getString("action.by_sequence"));
  93     seqColour.addActionListener(new ActionListener()
  94     {
  95       public void actionPerformed(ActionEvent actionEvent)
  96       {
  97         seqColour_actionPerformed(actionEvent);
  98       }
  99     });
 100     chainColour.setText(MessageManager.getString("action.by_chain"));
 101     chainColour.addActionListener(new ActionListener()
 102     {
 103       public void actionPerformed(ActionEvent actionEvent)
 104       {
 105         chainColour_actionPerformed(actionEvent);
 106       }
 107     });
 108     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 109     chargeColour.addActionListener(new ActionListener()
 110     {
 111       public void actionPerformed(ActionEvent actionEvent)
 112       {
 113         chargeColour_actionPerformed(actionEvent);
 114       }
 115     });
 116     zappoColour.setText(MessageManager.getString("label.zappo"));
 117     zappoColour.addActionListener(new ActionListener()
 118     {
 119       public void actionPerformed(ActionEvent actionEvent)
 120       {
 121         zappoColour_actionPerformed(actionEvent);
 122       }
 123     });
 124     taylorColour.setText(MessageManager.getString("label.taylor"));
 125     taylorColour.addActionListener(new ActionListener()
 126     {
 127       public void actionPerformed(ActionEvent actionEvent)
 128       {
 129         taylorColour_actionPerformed(actionEvent);
 130       }
 131     });
 132     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 133     hydroColour.addActionListener(new ActionListener()
 134     {
 135       public void actionPerformed(ActionEvent actionEvent)
 136       {
 137         hydroColour_actionPerformed(actionEvent);
 138       }
 139     });
 140     strandColour.setText(MessageManager.getString("label.strand_propensity"));
 141     strandColour.addActionListener(new ActionListener()
 142     {
 143       public void actionPerformed(ActionEvent actionEvent)
 144       {
 145         strandColour_actionPerformed(actionEvent);
 146       }
 147     });
 148     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 149     helixColour.addActionListener(new ActionListener()
 150     {
 151       public void actionPerformed(ActionEvent actionEvent)
 152       {
 153         helixColour_actionPerformed(actionEvent);
 154       }
 155     });
 156     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 157     turnColour.addActionListener(new ActionListener()
 158     {
 159       public void actionPerformed(ActionEvent actionEvent)
 160       {
 161         turnColour_actionPerformed(actionEvent);
 162       }
 163     });
 164     buriedColour.setText(MessageManager.getString("label.buried_index"));
 165     buriedColour.addActionListener(new ActionListener()
 166     {
 167       public void actionPerformed(ActionEvent actionEvent)
 168       {
 169         buriedColour_actionPerformed(actionEvent);
 170       }
 171     });
 172     purinePyrimidineColour.setText(MessageManager.getString("label.purine_pyrimidine"));
 173     purinePyrimidineColour.addActionListener(new ActionListener()
 174     {
 175       public void actionPerformed(ActionEvent actionEvent)
 176       {
 177         purinePyrimidineColour_actionPerformed(actionEvent);
 178       }
 179     });
 180
 181     userColour.setText(MessageManager.getString("action.user_defined"));
 182     userColour.addActionListener(new ActionListener()
 183     {
 184       public void actionPerformed(ActionEvent actionEvent)
 185       {
 186         userColour_actionPerformed(actionEvent);
 187       }
 188     });
 189     jmolColour.setSelected(false);
 190     jmolColour.setText(MessageManager.getString("label.colour_with_jmol"));
 191     jmolColour.setToolTipText(MessageManager.getString("label.let_jmol_manage_structure_colours"));
 192     jmolColour.addActionListener(new ActionListener()
 193     {
 194       public void actionPerformed(ActionEvent actionEvent)
 195       {
 196         jmolColour_actionPerformed(actionEvent);
 197       }
 198     });
 199     helpMenu.setText(MessageManager.getString("action.help"));
 200     jmolHelp.setText(MessageManager.getString("label.jmol_help"));
 201     jmolHelp.addActionListener(new ActionListener()
 202     {
 203       public void actionPerformed(ActionEvent actionEvent)
 204       {
 205         jmolHelp_actionPerformed(actionEvent);
 206       }
 207     });
 208     alignStructs.setText(MessageManager.getString("label.align_structures"));
 209     alignStructs.addActionListener(new ActionListener()
 210     {
 211       public void actionPerformed(ActionEvent actionEvent)
 212       {
 213         alignStructs_actionPerformed(actionEvent);
 214       }
 215     });
 216     jmolActionMenu.setText(MessageManager.getString("label.jmol"));
 217     menuBar.add(fileMenu);
 218     menuBar.add(viewMenu);
 219     menuBar.add(colourMenu);
 220     menuBar.add(jmolActionMenu);
 221     jmolActionMenu.setVisible(false);
 222     menuBar.add(helpMenu);
 223     fileMenu.add(savemenu);
 224     fileMenu.add(viewMapping);
 225     savemenu.add(pdbFile);
 226     savemenu.add(png);
 227     savemenu.add(eps);
 228     viewMenu.add(chainMenu);
 229
 230     colourMenu.add(seqColour);
 231     colourMenu.add(chainColour);
 232     colourMenu.add(chargeColour);
 233     colourMenu.add(zappoColour);
 234     colourMenu.add(taylorColour);
 235     colourMenu.add(hydroColour);
 236     colourMenu.add(helixColour);
 237     colourMenu.add(strandColour);
 238     colourMenu.add(turnColour);
 239     colourMenu.add(buriedColour);
 240     colourMenu.add(purinePyrimidineColour);
 241     colourMenu.add(userColour);
 242     colourMenu.add(jmolColour);
 243     colourMenu.add(backGround);
 244
 245     colourButtons.add(seqColour);
 246     colourButtons.add(chainColour);
 247     colourButtons.add(chargeColour);
 248     colourButtons.add(zappoColour);
 249     colourButtons.add(taylorColour);
 250     colourButtons.add(hydroColour);
 251     colourButtons.add(helixColour);
 252     colourButtons.add(strandColour);
 253     colourButtons.add(turnColour);
 254     colourButtons.add(buriedColour);
 255     colourButtons.add(userColour);
 256     colourButtons.add(jmolColour);
 257
 258     helpMenu.add(jmolHelp);
 259     jmolActionMenu.add(alignStructs);
 260   }
 261
 262   protected void jmolColour_actionPerformed(ActionEvent actionEvent)
 263   {
 264   }
 265
 266   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 267   {
 268   }
 269
 270   JMenuBar menuBar = new JMenuBar();
 271
 272   JMenu fileMenu = new JMenu();
 273
 274   JMenu savemenu = new JMenu();
 275
 276   JMenuItem pdbFile = new JMenuItem();
 277
 278   JMenuItem png = new JMenuItem();
 279
 280   JMenuItem eps = new JMenuItem();
 281
 282   JMenuItem viewMapping = new JMenuItem();
 283
 284   protected JMenu viewMenu = new JMenu();
 285
 286   protected JMenu chainMenu = new JMenu();
 287
 288   JMenu jMenu1 = new JMenu();
 289
 290   protected JMenu colourMenu = new JMenu();
 291
 292   protected JMenu jmolActionMenu = new JMenu();
 293
 294   protected JMenuItem alignStructs = new JMenuItem();
 295
 296   JMenuItem backGround = new JMenuItem();
 297
 298   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 299
 300   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 301
 302   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 303
 304   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 305
 306   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 307
 308   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 309
 310   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 311
 312   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 313
 314   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 315
 316   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 317
 318   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 319
 320   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 321
 322   protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
 323
 324   protected ButtonGroup colourButtons = new ButtonGroup();
 325
 326   JMenu helpMenu = new JMenu();
 327
 328   JMenuItem jmolHelp = new JMenuItem();
 329
 330   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 331   {
 332
 333   }
 334
 335   public void png_actionPerformed(ActionEvent actionEvent)
 336   {
 337
 338   }
 339
 340   public void eps_actionPerformed(ActionEvent actionEvent)
 341   {
 342
 343   }
 344
 345   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 346   {
 347
 348   }
 349
 350   public void seqColour_actionPerformed(ActionEvent actionEvent)
 351   {
 352
 353   }
 354
 355   public void chainColour_actionPerformed(ActionEvent actionEvent)
 356   {
 357
 358   }
 359
 360   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 361   {
 362
 363   }
 364
 365   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 366   {
 367
 368   }
 369
 370   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 371   {
 372
 373   }
 374
 375   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 376   {
 377
 378   }
 379
 380   public void helixColour_actionPerformed(ActionEvent actionEvent)
 381   {
 382
 383   }
 384
 385   public void strandColour_actionPerformed(ActionEvent actionEvent)
 386   {
 387
 388   }
 389
 390   public void turnColour_actionPerformed(ActionEvent actionEvent)
 391   {
 392
 393   }
 394
 395   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 396   {
 397
 398   }
 399
 400   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 401   {
 402
 403   }
 404
 405   public void userColour_actionPerformed(ActionEvent actionEvent)
 406   {
 407
 408   }
 409
 410   public void backGround_actionPerformed(ActionEvent actionEvent)
 411   {
 412
 413   }
 414
 415   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 416   {
 417
 418   }
 419 }