2 * Jalview - A Sequence Alignment Editor and Viewer
3 * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
19 package jalview.jbgui;
22 import java.awt.event.*;
25 public class GTreePanel
26 extends JInternalFrame
28 BorderLayout borderLayout1 = new BorderLayout();
29 public JScrollPane scrollPane = new JScrollPane();
30 JMenuBar jMenuBar1 = new JMenuBar();
31 JMenu jMenu1 = new JMenu();
32 JMenuItem saveAsNewick = new JMenuItem();
33 JMenuItem printMenu = new JMenuItem();
34 JMenu jMenu2 = new JMenu();
35 public JMenuItem font = new JMenuItem();
36 public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
37 public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
38 public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
39 public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
40 JMenuItem pngTree = new JMenuItem();
41 JMenuItem epsTree = new JMenuItem();
42 JMenu saveAsMenu = new JMenu();
43 JMenuItem textbox = new JMenuItem();
44 public JMenuItem originalSeqData = new JMenuItem();
50 this.setJMenuBar(jMenuBar1);
61 this.getContentPane().setLayout(borderLayout1);
62 this.setBackground(Color.white);
63 this.setFont(new java.awt.Font("Verdana", 0, 12));
64 scrollPane.setOpaque(false);
65 jMenu1.setText("File");
66 saveAsNewick.setText("Newick Format");
67 saveAsNewick.addActionListener(new ActionListener()
69 public void actionPerformed(ActionEvent e)
71 saveAsNewick_actionPerformed(e);
74 printMenu.setText("Print");
75 printMenu.addActionListener(new java.awt.event.ActionListener()
77 public void actionPerformed(ActionEvent e)
79 printMenu_actionPerformed(e);
82 jMenu2.setText("View");
83 font.setText("Font...");
84 font.addActionListener(new java.awt.event.ActionListener()
86 public void actionPerformed(ActionEvent e)
88 font_actionPerformed(e);
91 bootstrapMenu.setText("Show Bootstrap Values");
92 bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
94 public void actionPerformed(ActionEvent e)
96 bootstrapMenu_actionPerformed(e);
99 distanceMenu.setText("Show Distances");
100 distanceMenu.addActionListener(new java.awt.event.ActionListener()
102 public void actionPerformed(ActionEvent e)
104 distanceMenu_actionPerformed(e);
107 fitToWindow.setSelected(true);
108 fitToWindow.setText("Fit To Window");
109 fitToWindow.addActionListener(new java.awt.event.ActionListener()
111 public void actionPerformed(ActionEvent e)
113 fitToWindow_actionPerformed(e);
116 epsTree.setText("EPS");
117 epsTree.addActionListener(new java.awt.event.ActionListener()
119 public void actionPerformed(ActionEvent e)
121 epsTree_actionPerformed(e);
124 pngTree.setText("PNG");
125 pngTree.addActionListener(new java.awt.event.ActionListener()
127 public void actionPerformed(ActionEvent e)
129 pngTree_actionPerformed(e);
132 saveAsMenu.setText("Save as");
133 placeholdersMenu.setToolTipText(
134 "Marks leaves of tree not associated with a sequence");
135 placeholdersMenu.setText("Mark Unlinked Leaves");
136 placeholdersMenu.addActionListener(new ActionListener()
138 public void actionPerformed(ActionEvent e)
140 placeholdersMenu_actionPerformed(e);
143 textbox.setText("Output to Textbox...");
144 textbox.addActionListener(new ActionListener()
146 public void actionPerformed(ActionEvent e)
148 textbox_actionPerformed(e);
151 originalSeqData.setText("Input Data...");
152 originalSeqData.addActionListener(new ActionListener()
154 public void actionPerformed(ActionEvent e)
156 originalSeqData_actionPerformed(e);
159 this.getContentPane().add(scrollPane, BorderLayout.CENTER);
160 jMenuBar1.add(jMenu1);
161 jMenuBar1.add(jMenu2);
162 jMenu1.add(saveAsMenu);
164 jMenu1.add(printMenu);
165 jMenu1.add(originalSeqData);
166 jMenu2.add(fitToWindow);
168 jMenu2.add(distanceMenu);
169 jMenu2.add(bootstrapMenu);
170 jMenu2.add(placeholdersMenu);
171 saveAsMenu.add(saveAsNewick);
172 saveAsMenu.add(epsTree);
173 saveAsMenu.add(pngTree);
176 public void printMenu_actionPerformed(ActionEvent e)
180 public void font_actionPerformed(ActionEvent e)
184 public void distanceMenu_actionPerformed(ActionEvent e)
188 public void bootstrapMenu_actionPerformed(ActionEvent e)
192 public void fitToWindow_actionPerformed(ActionEvent e)
196 public void pngTree_actionPerformed(ActionEvent e)
200 public void epsTree_actionPerformed(ActionEvent e)
204 public void saveAsNewick_actionPerformed(ActionEvent e)
208 public void placeholdersMenu_actionPerformed(ActionEvent e)
212 public void textbox_actionPerformed(ActionEvent e)
216 public void fullid_actionPerformed(ActionEvent e)
221 public void originalSeqData_actionPerformed(ActionEvent e)