src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package jalview.schemabinding.version2.descriptors;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import jalview.schemabinding.version2.SequenceSet;
  15
  16 /**
  17  * Class SequenceSetDescriptor.
  18  *
  19  * @version $Revision$ $Date$
  20  */
  21 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  22
  23
  24       //--------------------------/
  25      //- Class/Member Variables -/
  26     //--------------------------/
  27
  28     /**
  29      * Field _elementDefinition.
  30      */
  31     private boolean _elementDefinition;
  32
  33     /**
  34      * Field _nsPrefix.
  35      */
  36     private java.lang.String _nsPrefix;
  37
  38     /**
  39      * Field _nsURI.
  40      */
  41     private java.lang.String _nsURI;
  42
  43     /**
  44      * Field _xmlName.
  45      */
  46     private java.lang.String _xmlName;
  47
  48
  49       //----------------/
  50      //- Constructors -/
  51     //----------------/
  52
  53     public SequenceSetDescriptor() {
  54         super();
  55         _nsURI = "www.vamsas.ac.uk/jalview/version2";
  56         _xmlName = "SequenceSet";
  57         _elementDefinition = true;
  58
  59         //-- set grouping compositor
  60         setCompositorAsSequence();
  61         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  62         org.exolab.castor.mapping.FieldHandler             handler        = null;
  63         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  64         //-- initialize attribute descriptors
  65
  66         //-- _gapChar
  67         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
  68         desc.setImmutable(true);
  69         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  70             public java.lang.Object getValue( java.lang.Object object )
  71                 throws IllegalStateException
  72             {
  73                 SequenceSet target = (SequenceSet) object;
  74                 return target.getGapChar();
  75             }
  76             public void setValue( java.lang.Object object, java.lang.Object value)
  77                 throws IllegalStateException, IllegalArgumentException
  78             {
  79                 try {
  80                     SequenceSet target = (SequenceSet) object;
  81                     target.setGapChar( (java.lang.String) value);
  82                 } catch (java.lang.Exception ex) {
  83                     throw new IllegalStateException(ex.toString());
  84                 }
  85             }
  86             public java.lang.Object newInstance(java.lang.Object parent) {
  87                 return null;
  88             }
  89         };
  90         desc.setHandler(handler);
  91         desc.setRequired(true);
  92         desc.setMultivalued(false);
  93         addFieldDescriptor(desc);
  94
  95         //-- validation code for: _gapChar
  96         fieldValidator = new org.exolab.castor.xml.FieldValidator();
  97         fieldValidator.setMinOccurs(1);
  98         { //-- local scope
  99             org.exolab.castor.xml.validators.StringValidator typeValidator;
 100             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 101             fieldValidator.setValidator(typeValidator);
 102             typeValidator.setWhiteSpace("preserve");
 103         }
 104         desc.setValidator(fieldValidator);
 105         //-- _datasetId
 106         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);
 107         desc.setImmutable(true);
 108         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 109             public java.lang.Object getValue( java.lang.Object object )
 110                 throws IllegalStateException
 111             {
 112                 SequenceSet target = (SequenceSet) object;
 113                 return target.getDatasetId();
 114             }
 115             public void setValue( java.lang.Object object, java.lang.Object value)
 116                 throws IllegalStateException, IllegalArgumentException
 117             {
 118                 try {
 119                     SequenceSet target = (SequenceSet) object;
 120                     target.setDatasetId( (java.lang.String) value);
 121                 } catch (java.lang.Exception ex) {
 122                     throw new IllegalStateException(ex.toString());
 123                 }
 124             }
 125             public java.lang.Object newInstance(java.lang.Object parent) {
 126                 return null;
 127             }
 128         };
 129         desc.setHandler(handler);
 130         desc.setMultivalued(false);
 131         addFieldDescriptor(desc);
 132
 133         //-- validation code for: _datasetId
 134         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 135         { //-- local scope
 136             org.exolab.castor.xml.validators.StringValidator typeValidator;
 137             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 138             fieldValidator.setValidator(typeValidator);
 139             typeValidator.setWhiteSpace("preserve");
 140         }
 141         desc.setValidator(fieldValidator);
 142         //-- initialize element descriptors
 143
 144         //-- _sequenceList
 145         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);
 146         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 147             public java.lang.Object getValue( java.lang.Object object )
 148                 throws IllegalStateException
 149             {
 150                 SequenceSet target = (SequenceSet) object;
 151                 return target.getSequence();
 152             }
 153             public void setValue( java.lang.Object object, java.lang.Object value)
 154                 throws IllegalStateException, IllegalArgumentException
 155             {
 156                 try {
 157                     SequenceSet target = (SequenceSet) object;
 158                     target.addSequence( (jalview.schemabinding.version2.Sequence) value);
 159                 } catch (java.lang.Exception ex) {
 160                     throw new IllegalStateException(ex.toString());
 161                 }
 162             }
 163             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 164                 try {
 165                     SequenceSet target = (SequenceSet) object;
 166                     target.removeAllSequence();
 167                 } catch (java.lang.Exception ex) {
 168                     throw new IllegalStateException(ex.toString());
 169                 }
 170             }
 171             public java.lang.Object newInstance(java.lang.Object parent) {
 172                 return new jalview.schemabinding.version2.Sequence();
 173             }
 174         };
 175         desc.setHandler(handler);
 176         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 177         desc.setMultivalued(true);
 178         addFieldDescriptor(desc);
 179
 180         //-- validation code for: _sequenceList
 181         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 182         fieldValidator.setMinOccurs(0);
 183         { //-- local scope
 184         }
 185         desc.setValidator(fieldValidator);
 186         //-- _annotationList
 187         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);
 188         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 189             public java.lang.Object getValue( java.lang.Object object )
 190                 throws IllegalStateException
 191             {
 192                 SequenceSet target = (SequenceSet) object;
 193                 return target.getAnnotation();
 194             }
 195             public void setValue( java.lang.Object object, java.lang.Object value)
 196                 throws IllegalStateException, IllegalArgumentException
 197             {
 198                 try {
 199                     SequenceSet target = (SequenceSet) object;
 200                     target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);
 201                 } catch (java.lang.Exception ex) {
 202                     throw new IllegalStateException(ex.toString());
 203                 }
 204             }
 205             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 206                 try {
 207                     SequenceSet target = (SequenceSet) object;
 208                     target.removeAllAnnotation();
 209                 } catch (java.lang.Exception ex) {
 210                     throw new IllegalStateException(ex.toString());
 211                 }
 212             }
 213             public java.lang.Object newInstance(java.lang.Object parent) {
 214                 return new jalview.schemabinding.version2.Annotation();
 215             }
 216         };
 217         desc.setHandler(handler);
 218         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 219         desc.setMultivalued(true);
 220         addFieldDescriptor(desc);
 221
 222         //-- validation code for: _annotationList
 223         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 224         fieldValidator.setMinOccurs(0);
 225         { //-- local scope
 226         }
 227         desc.setValidator(fieldValidator);
 228         //-- _sequenceSetPropertiesList
 229         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);
 230         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 231             public java.lang.Object getValue( java.lang.Object object )
 232                 throws IllegalStateException
 233             {
 234                 SequenceSet target = (SequenceSet) object;
 235                 return target.getSequenceSetProperties();
 236             }
 237             public void setValue( java.lang.Object object, java.lang.Object value)
 238                 throws IllegalStateException, IllegalArgumentException
 239             {
 240                 try {
 241                     SequenceSet target = (SequenceSet) object;
 242                     target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);
 243                 } catch (java.lang.Exception ex) {
 244                     throw new IllegalStateException(ex.toString());
 245                 }
 246             }
 247             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 248                 try {
 249                     SequenceSet target = (SequenceSet) object;
 250                     target.removeAllSequenceSetProperties();
 251                 } catch (java.lang.Exception ex) {
 252                     throw new IllegalStateException(ex.toString());
 253                 }
 254             }
 255             public java.lang.Object newInstance(java.lang.Object parent) {
 256                 return new jalview.schemabinding.version2.SequenceSetProperties();
 257             }
 258         };
 259         desc.setHandler(handler);
 260         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 261         desc.setMultivalued(true);
 262         addFieldDescriptor(desc);
 263
 264         //-- validation code for: _sequenceSetPropertiesList
 265         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 266         fieldValidator.setMinOccurs(0);
 267         { //-- local scope
 268         }
 269         desc.setValidator(fieldValidator);
 270         //-- _alcodonFrameList
 271         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);
 272         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 273             public java.lang.Object getValue( java.lang.Object object )
 274                 throws IllegalStateException
 275             {
 276                 SequenceSet target = (SequenceSet) object;
 277                 return target.getAlcodonFrame();
 278             }
 279             public void setValue( java.lang.Object object, java.lang.Object value)
 280                 throws IllegalStateException, IllegalArgumentException
 281             {
 282                 try {
 283                     SequenceSet target = (SequenceSet) object;
 284                     target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);
 285                 } catch (java.lang.Exception ex) {
 286                     throw new IllegalStateException(ex.toString());
 287                 }
 288             }
 289             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 290                 try {
 291                     SequenceSet target = (SequenceSet) object;
 292                     target.removeAllAlcodonFrame();
 293                 } catch (java.lang.Exception ex) {
 294                     throw new IllegalStateException(ex.toString());
 295                 }
 296             }
 297             public java.lang.Object newInstance(java.lang.Object parent) {
 298                 return new jalview.schemabinding.version2.AlcodonFrame();
 299             }
 300         };
 301         desc.setHandler(handler);
 302         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 303         desc.setMultivalued(true);
 304         addFieldDescriptor(desc);
 305
 306         //-- validation code for: _alcodonFrameList
 307         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 308         fieldValidator.setMinOccurs(0);
 309         { //-- local scope
 310         }
 311         desc.setValidator(fieldValidator);
 312     }
 313
 314
 315       //-----------/
 316      //- Methods -/
 317     //-----------/
 318
 319     /**
 320      * Method getAccessMode.
 321      *
 322      * @return the access mode specified for this class.
 323      */
 324     public org.exolab.castor.mapping.AccessMode getAccessMode(
 325     ) {
 326         return null;
 327     }
 328
 329     /**
 330      * Method getIdentity.
 331      *
 332      * @return the identity field, null if this class has no
 333      * identity.
 334      */
 335     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
 336     ) {
 337         return super.getIdentity();
 338     }
 339
 340     /**
 341      * Method getJavaClass.
 342      *
 343      * @return the Java class represented by this descriptor.
 344      */
 345     public java.lang.Class getJavaClass(
 346     ) {
 347         return jalview.schemabinding.version2.SequenceSet.class;
 348     }
 349
 350     /**
 351      * Method getNameSpacePrefix.
 352      *
 353      * @return the namespace prefix to use when marshaling as XML.
 354      */
 355     public java.lang.String getNameSpacePrefix(
 356     ) {
 357         return _nsPrefix;
 358     }
 359
 360     /**
 361      * Method getNameSpaceURI.
 362      *
 363      * @return the namespace URI used when marshaling and
 364      * unmarshaling as XML.
 365      */
 366     public java.lang.String getNameSpaceURI(
 367     ) {
 368         return _nsURI;
 369     }
 370
 371     /**
 372      * Method getValidator.
 373      *
 374      * @return a specific validator for the class described by this
 375      * ClassDescriptor.
 376      */
 377     public org.exolab.castor.xml.TypeValidator getValidator(
 378     ) {
 379         return this;
 380     }
 381
 382     /**
 383      * Method getXMLName.
 384      *
 385      * @return the XML Name for the Class being described.
 386      */
 387     public java.lang.String getXMLName(
 388     ) {
 389         return _xmlName;
 390     }
 391
 392     /**
 393      * Method isElementDefinition.
 394      *
 395      * @return true if XML schema definition of this Class is that
 396      * of a global
 397      * element or element with anonymous type definition.
 398      */
 399     public boolean isElementDefinition(
 400     ) {
 401         return _elementDefinition;
 402     }
 403
 404 }