src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

   1 /*\r
   2  * This class was automatically generated with \r
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
   4  * Schema.\r
   5  * $Id$\r
   6  */\r
   7 \r
   8 package jalview.schemabinding.version2.descriptors;\r
   9 \r
  10   //---------------------------------/\r
  11  //- Imported classes and packages -/\r
  12 //---------------------------------/\r
  13 \r
  14 import jalview.schemabinding.version2.SequenceSet;\r
  15 \r
  16 /**\r
  17  * Class SequenceSetDescriptor.\r
  18  * \r
  19  * @version $Revision$ $Date$\r
  20  */\r
  21 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
  22 \r
  23 \r
  24       //--------------------------/\r
  25      //- Class/Member Variables -/\r
  26     //--------------------------/\r
  27 \r
  28     /**\r
  29      * Field _elementDefinition.\r
  30      */\r
  31     private boolean _elementDefinition;\r
  32 \r
  33     /**\r
  34      * Field _nsPrefix.\r
  35      */\r
  36     private java.lang.String _nsPrefix;\r
  37 \r
  38     /**\r
  39      * Field _nsURI.\r
  40      */\r
  41     private java.lang.String _nsURI;\r
  42 \r
  43     /**\r
  44      * Field _xmlName.\r
  45      */\r
  46     private java.lang.String _xmlName;\r
  47 \r
  48 \r
  49       //----------------/\r
  50      //- Constructors -/\r
  51     //----------------/\r
  52 \r
  53     public SequenceSetDescriptor() {\r
  54         super();\r
  55         _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
  56         _xmlName = "SequenceSet";\r
  57         _elementDefinition = true;\r
  58         \r
  59         //-- set grouping compositor\r
  60         setCompositorAsSequence();\r
  61         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
  62         org.exolab.castor.mapping.FieldHandler             handler        = null;\r
  63         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
  64         //-- initialize attribute descriptors\r
  65         \r
  66         //-- _gapChar\r
  67         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
  68         desc.setImmutable(true);\r
  69         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
  70             public java.lang.Object getValue( java.lang.Object object ) \r
  71                 throws IllegalStateException\r
  72             {\r
  73                 SequenceSet target = (SequenceSet) object;\r
  74                 return target.getGapChar();\r
  75             }\r
  76             public void setValue( java.lang.Object object, java.lang.Object value) \r
  77                 throws IllegalStateException, IllegalArgumentException\r
  78             {\r
  79                 try {\r
  80                     SequenceSet target = (SequenceSet) object;\r
  81                     target.setGapChar( (java.lang.String) value);\r
  82                 } catch (java.lang.Exception ex) {\r
  83                     throw new IllegalStateException(ex.toString());\r
  84                 }\r
  85             }\r
  86             public java.lang.Object newInstance(java.lang.Object parent) {\r
  87                 return null;\r
  88             }\r
  89         };\r
  90         desc.setHandler(handler);\r
  91         desc.setRequired(true);\r
  92         desc.setMultivalued(false);\r
  93         addFieldDescriptor(desc);\r
  94         \r
  95         //-- validation code for: _gapChar\r
  96         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
  97         fieldValidator.setMinOccurs(1);\r
  98         { //-- local scope\r
  99             org.exolab.castor.xml.validators.StringValidator typeValidator;\r
 100             typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
 101             fieldValidator.setValidator(typeValidator);\r
 102             typeValidator.setWhiteSpace("preserve");\r
 103         }\r
 104         desc.setValidator(fieldValidator);\r
 105         //-- _datasetId\r
 106         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);\r
 107         desc.setImmutable(true);\r
 108         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 109             public java.lang.Object getValue( java.lang.Object object ) \r
 110                 throws IllegalStateException\r
 111             {\r
 112                 SequenceSet target = (SequenceSet) object;\r
 113                 return target.getDatasetId();\r
 114             }\r
 115             public void setValue( java.lang.Object object, java.lang.Object value) \r
 116                 throws IllegalStateException, IllegalArgumentException\r
 117             {\r
 118                 try {\r
 119                     SequenceSet target = (SequenceSet) object;\r
 120                     target.setDatasetId( (java.lang.String) value);\r
 121                 } catch (java.lang.Exception ex) {\r
 122                     throw new IllegalStateException(ex.toString());\r
 123                 }\r
 124             }\r
 125             public java.lang.Object newInstance(java.lang.Object parent) {\r
 126                 return null;\r
 127             }\r
 128         };\r
 129         desc.setHandler(handler);\r
 130         desc.setMultivalued(false);\r
 131         addFieldDescriptor(desc);\r
 132         \r
 133         //-- validation code for: _datasetId\r
 134         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 135         { //-- local scope\r
 136             org.exolab.castor.xml.validators.StringValidator typeValidator;\r
 137             typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
 138             fieldValidator.setValidator(typeValidator);\r
 139             typeValidator.setWhiteSpace("preserve");\r
 140         }\r
 141         desc.setValidator(fieldValidator);\r
 142         //-- initialize element descriptors\r
 143         \r
 144         //-- _sequenceList\r
 145         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
 146         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 147             public java.lang.Object getValue( java.lang.Object object ) \r
 148                 throws IllegalStateException\r
 149             {\r
 150                 SequenceSet target = (SequenceSet) object;\r
 151                 return target.getSequence();\r
 152             }\r
 153             public void setValue( java.lang.Object object, java.lang.Object value) \r
 154                 throws IllegalStateException, IllegalArgumentException\r
 155             {\r
 156                 try {\r
 157                     SequenceSet target = (SequenceSet) object;\r
 158                     target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
 159                 } catch (java.lang.Exception ex) {\r
 160                     throw new IllegalStateException(ex.toString());\r
 161                 }\r
 162             }\r
 163             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 164                 try {\r
 165                     SequenceSet target = (SequenceSet) object;\r
 166                     target.removeAllSequence();\r
 167                 } catch (java.lang.Exception ex) {\r
 168                     throw new IllegalStateException(ex.toString());\r
 169                 }\r
 170             }\r
 171             public java.lang.Object newInstance(java.lang.Object parent) {\r
 172                 return new jalview.schemabinding.version2.Sequence();\r
 173             }\r
 174         };\r
 175         desc.setHandler(handler);\r
 176         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 177         desc.setMultivalued(true);\r
 178         addFieldDescriptor(desc);\r
 179         \r
 180         //-- validation code for: _sequenceList\r
 181         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 182         fieldValidator.setMinOccurs(0);\r
 183         { //-- local scope\r
 184         }\r
 185         desc.setValidator(fieldValidator);\r
 186         //-- _annotationList\r
 187         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
 188         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 189             public java.lang.Object getValue( java.lang.Object object ) \r
 190                 throws IllegalStateException\r
 191             {\r
 192                 SequenceSet target = (SequenceSet) object;\r
 193                 return target.getAnnotation();\r
 194             }\r
 195             public void setValue( java.lang.Object object, java.lang.Object value) \r
 196                 throws IllegalStateException, IllegalArgumentException\r
 197             {\r
 198                 try {\r
 199                     SequenceSet target = (SequenceSet) object;\r
 200                     target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
 201                 } catch (java.lang.Exception ex) {\r
 202                     throw new IllegalStateException(ex.toString());\r
 203                 }\r
 204             }\r
 205             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 206                 try {\r
 207                     SequenceSet target = (SequenceSet) object;\r
 208                     target.removeAllAnnotation();\r
 209                 } catch (java.lang.Exception ex) {\r
 210                     throw new IllegalStateException(ex.toString());\r
 211                 }\r
 212             }\r
 213             public java.lang.Object newInstance(java.lang.Object parent) {\r
 214                 return new jalview.schemabinding.version2.Annotation();\r
 215             }\r
 216         };\r
 217         desc.setHandler(handler);\r
 218         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 219         desc.setMultivalued(true);\r
 220         addFieldDescriptor(desc);\r
 221         \r
 222         //-- validation code for: _annotationList\r
 223         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 224         fieldValidator.setMinOccurs(0);\r
 225         { //-- local scope\r
 226         }\r
 227         desc.setValidator(fieldValidator);\r
 228         //-- _sequenceSetPropertiesList\r
 229         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
 230         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 231             public java.lang.Object getValue( java.lang.Object object ) \r
 232                 throws IllegalStateException\r
 233             {\r
 234                 SequenceSet target = (SequenceSet) object;\r
 235                 return target.getSequenceSetProperties();\r
 236             }\r
 237             public void setValue( java.lang.Object object, java.lang.Object value) \r
 238                 throws IllegalStateException, IllegalArgumentException\r
 239             {\r
 240                 try {\r
 241                     SequenceSet target = (SequenceSet) object;\r
 242                     target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
 243                 } catch (java.lang.Exception ex) {\r
 244                     throw new IllegalStateException(ex.toString());\r
 245                 }\r
 246             }\r
 247             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 248                 try {\r
 249                     SequenceSet target = (SequenceSet) object;\r
 250                     target.removeAllSequenceSetProperties();\r
 251                 } catch (java.lang.Exception ex) {\r
 252                     throw new IllegalStateException(ex.toString());\r
 253                 }\r
 254             }\r
 255             public java.lang.Object newInstance(java.lang.Object parent) {\r
 256                 return new jalview.schemabinding.version2.SequenceSetProperties();\r
 257             }\r
 258         };\r
 259         desc.setHandler(handler);\r
 260         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 261         desc.setMultivalued(true);\r
 262         addFieldDescriptor(desc);\r
 263         \r
 264         //-- validation code for: _sequenceSetPropertiesList\r
 265         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 266         fieldValidator.setMinOccurs(0);\r
 267         { //-- local scope\r
 268         }\r
 269         desc.setValidator(fieldValidator);\r
 270         //-- _alcodonFrameList\r
 271         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);\r
 272         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 273             public java.lang.Object getValue( java.lang.Object object ) \r
 274                 throws IllegalStateException\r
 275             {\r
 276                 SequenceSet target = (SequenceSet) object;\r
 277                 return target.getAlcodonFrame();\r
 278             }\r
 279             public void setValue( java.lang.Object object, java.lang.Object value) \r
 280                 throws IllegalStateException, IllegalArgumentException\r
 281             {\r
 282                 try {\r
 283                     SequenceSet target = (SequenceSet) object;\r
 284                     target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);\r
 285                 } catch (java.lang.Exception ex) {\r
 286                     throw new IllegalStateException(ex.toString());\r
 287                 }\r
 288             }\r
 289             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 290                 try {\r
 291                     SequenceSet target = (SequenceSet) object;\r
 292                     target.removeAllAlcodonFrame();\r
 293                 } catch (java.lang.Exception ex) {\r
 294                     throw new IllegalStateException(ex.toString());\r
 295                 }\r
 296             }\r
 297             public java.lang.Object newInstance(java.lang.Object parent) {\r
 298                 return new jalview.schemabinding.version2.AlcodonFrame();\r
 299             }\r
 300         };\r
 301         desc.setHandler(handler);\r
 302         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 303         desc.setMultivalued(true);\r
 304         addFieldDescriptor(desc);\r
 305         \r
 306         //-- validation code for: _alcodonFrameList\r
 307         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 308         fieldValidator.setMinOccurs(0);\r
 309         { //-- local scope\r
 310         }\r
 311         desc.setValidator(fieldValidator);\r
 312     }\r
 313 \r
 314 \r
 315       //-----------/\r
 316      //- Methods -/\r
 317     //-----------/\r
 318 \r
 319     /**\r
 320      * Method getAccessMode.\r
 321      * \r
 322      * @return the access mode specified for this class.\r
 323      */\r
 324     public org.exolab.castor.mapping.AccessMode getAccessMode(\r
 325     ) {\r
 326         return null;\r
 327     }\r
 328 \r
 329     /**\r
 330      * Method getIdentity.\r
 331      * \r
 332      * @return the identity field, null if this class has no\r
 333      * identity.\r
 334      */\r
 335     public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
 336     ) {\r
 337         return super.getIdentity();\r
 338     }\r
 339 \r
 340     /**\r
 341      * Method getJavaClass.\r
 342      * \r
 343      * @return the Java class represented by this descriptor.\r
 344      */\r
 345     public java.lang.Class getJavaClass(\r
 346     ) {\r
 347         return jalview.schemabinding.version2.SequenceSet.class;\r
 348     }\r
 349 \r
 350     /**\r
 351      * Method getNameSpacePrefix.\r
 352      * \r
 353      * @return the namespace prefix to use when marshaling as XML.\r
 354      */\r
 355     public java.lang.String getNameSpacePrefix(\r
 356     ) {\r
 357         return _nsPrefix;\r
 358     }\r
 359 \r
 360     /**\r
 361      * Method getNameSpaceURI.\r
 362      * \r
 363      * @return the namespace URI used when marshaling and\r
 364      * unmarshaling as XML.\r
 365      */\r
 366     public java.lang.String getNameSpaceURI(\r
 367     ) {\r
 368         return _nsURI;\r
 369     }\r
 370 \r
 371     /**\r
 372      * Method getValidator.\r
 373      * \r
 374      * @return a specific validator for the class described by this\r
 375      * ClassDescriptor.\r
 376      */\r
 377     public org.exolab.castor.xml.TypeValidator getValidator(\r
 378     ) {\r
 379         return this;\r
 380     }\r
 381 \r
 382     /**\r
 383      * Method getXMLName.\r
 384      * \r
 385      * @return the XML Name for the Class being described.\r
 386      */\r
 387     public java.lang.String getXMLName(\r
 388     ) {\r
 389         return _xmlName;\r
 390     }\r
 391 \r
 392     /**\r
 393      * Method isElementDefinition.\r
 394      * \r
 395      * @return true if XML schema definition of this Class is that\r
 396      * of a global\r
 397      * element or element with anonymous type definition.\r
 398      */\r
 399     public boolean isElementDefinition(\r
 400     ) {\r
 401         return _elementDefinition;\r
 402     }\r
 403 \r
 404 }\r