src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

   1 /*\r
   2  * This class was automatically generated with \r
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
   4  * Schema.\r
   5  * $Id$\r
   6  */\r
   7 \r
   8 package jalview.schemabinding.version2.descriptors;\r
   9 \r
  10   //---------------------------------/\r
  11  //- Imported classes and packages -/\r
  12 //---------------------------------/\r
  13 \r
  14 import jalview.schemabinding.version2.SequenceSet;\r
  15 \r
  16 /**\r
  17  * Class SequenceSetDescriptor.\r
  18  * \r
  19  * @version $Revision$ $Date$\r
  20  */\r
  21 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
  22 \r
  23 \r
  24       //--------------------------/\r
  25      //- Class/Member Variables -/\r
  26     //--------------------------/\r
  27 \r
  28     /**\r
  29      * Field _elementDefinition.\r
  30      */\r
  31     private boolean _elementDefinition;\r
  32 \r
  33     /**\r
  34      * Field _nsPrefix.\r
  35      */\r
  36     private java.lang.String _nsPrefix;\r
  37 \r
  38     /**\r
  39      * Field _nsURI.\r
  40      */\r
  41     private java.lang.String _nsURI;\r
  42 \r
  43     /**\r
  44      * Field _xmlName.\r
  45      */\r
  46     private java.lang.String _xmlName;\r
  47 \r
  48     /**\r
  49      * Field _identity.\r
  50      */\r
  51     private org.exolab.castor.xml.XMLFieldDescriptor _identity;\r
  52 \r
  53 \r
  54       //----------------/\r
  55      //- Constructors -/\r
  56     //----------------/\r
  57 \r
  58     public SequenceSetDescriptor() {\r
  59         super();\r
  60         _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
  61         _xmlName = "SequenceSet";\r
  62         _elementDefinition = true;\r
  63         \r
  64         //-- set grouping compositor\r
  65         setCompositorAsSequence();\r
  66         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
  67         org.exolab.castor.mapping.FieldHandler             handler        = null;\r
  68         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
  69         //-- initialize attribute descriptors\r
  70         \r
  71         //-- _gapChar\r
  72         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
  73         desc.setImmutable(true);\r
  74         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
  75             public java.lang.Object getValue( java.lang.Object object ) \r
  76                 throws IllegalStateException\r
  77             {\r
  78                 SequenceSet target = (SequenceSet) object;\r
  79                 return target.getGapChar();\r
  80             }\r
  81             public void setValue( java.lang.Object object, java.lang.Object value) \r
  82                 throws IllegalStateException, IllegalArgumentException\r
  83             {\r
  84                 try {\r
  85                     SequenceSet target = (SequenceSet) object;\r
  86                     target.setGapChar( (java.lang.String) value);\r
  87                 } catch (java.lang.Exception ex) {\r
  88                     throw new IllegalStateException(ex.toString());\r
  89                 }\r
  90             }\r
  91             public java.lang.Object newInstance(java.lang.Object parent) {\r
  92                 return null;\r
  93             }\r
  94         };\r
  95         desc.setHandler(handler);\r
  96         desc.setRequired(true);\r
  97         desc.setMultivalued(false);\r
  98         addFieldDescriptor(desc);\r
  99         \r
 100         //-- validation code for: _gapChar\r
 101         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 102         fieldValidator.setMinOccurs(1);\r
 103         { //-- local scope\r
 104             org.exolab.castor.xml.validators.StringValidator typeValidator;\r
 105             typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
 106             fieldValidator.setValidator(typeValidator);\r
 107             typeValidator.setWhiteSpace("preserve");\r
 108         }\r
 109         desc.setValidator(fieldValidator);\r
 110         //-- initialize element descriptors\r
 111         \r
 112         //-- _sequenceList\r
 113         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
 114         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 115             public java.lang.Object getValue( java.lang.Object object ) \r
 116                 throws IllegalStateException\r
 117             {\r
 118                 SequenceSet target = (SequenceSet) object;\r
 119                 return target.getSequence();\r
 120             }\r
 121             public void setValue( java.lang.Object object, java.lang.Object value) \r
 122                 throws IllegalStateException, IllegalArgumentException\r
 123             {\r
 124                 try {\r
 125                     SequenceSet target = (SequenceSet) object;\r
 126                     target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
 127                 } catch (java.lang.Exception ex) {\r
 128                     throw new IllegalStateException(ex.toString());\r
 129                 }\r
 130             }\r
 131             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 132                 try {\r
 133                     SequenceSet target = (SequenceSet) object;\r
 134                     target.removeAllSequence();\r
 135                 } catch (java.lang.Exception ex) {\r
 136                     throw new IllegalStateException(ex.toString());\r
 137                 }\r
 138             }\r
 139             public java.lang.Object newInstance(java.lang.Object parent) {\r
 140                 return new jalview.schemabinding.version2.Sequence();\r
 141             }\r
 142         };\r
 143         desc.setHandler(handler);\r
 144         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 145         desc.setMultivalued(true);\r
 146         addFieldDescriptor(desc);\r
 147         \r
 148         //-- validation code for: _sequenceList\r
 149         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 150         fieldValidator.setMinOccurs(0);\r
 151         { //-- local scope\r
 152         }\r
 153         desc.setValidator(fieldValidator);\r
 154         //-- _annotationList\r
 155         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
 156         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 157             public java.lang.Object getValue( java.lang.Object object ) \r
 158                 throws IllegalStateException\r
 159             {\r
 160                 SequenceSet target = (SequenceSet) object;\r
 161                 return target.getAnnotation();\r
 162             }\r
 163             public void setValue( java.lang.Object object, java.lang.Object value) \r
 164                 throws IllegalStateException, IllegalArgumentException\r
 165             {\r
 166                 try {\r
 167                     SequenceSet target = (SequenceSet) object;\r
 168                     target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
 169                 } catch (java.lang.Exception ex) {\r
 170                     throw new IllegalStateException(ex.toString());\r
 171                 }\r
 172             }\r
 173             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 174                 try {\r
 175                     SequenceSet target = (SequenceSet) object;\r
 176                     target.removeAllAnnotation();\r
 177                 } catch (java.lang.Exception ex) {\r
 178                     throw new IllegalStateException(ex.toString());\r
 179                 }\r
 180             }\r
 181             public java.lang.Object newInstance(java.lang.Object parent) {\r
 182                 return new jalview.schemabinding.version2.Annotation();\r
 183             }\r
 184         };\r
 185         desc.setHandler(handler);\r
 186         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 187         desc.setMultivalued(true);\r
 188         addFieldDescriptor(desc);\r
 189         \r
 190         //-- validation code for: _annotationList\r
 191         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 192         fieldValidator.setMinOccurs(0);\r
 193         { //-- local scope\r
 194         }\r
 195         desc.setValidator(fieldValidator);\r
 196         //-- _sequenceSetPropertiesList\r
 197         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
 198         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 199             public java.lang.Object getValue( java.lang.Object object ) \r
 200                 throws IllegalStateException\r
 201             {\r
 202                 SequenceSet target = (SequenceSet) object;\r
 203                 return target.getSequenceSetProperties();\r
 204             }\r
 205             public void setValue( java.lang.Object object, java.lang.Object value) \r
 206                 throws IllegalStateException, IllegalArgumentException\r
 207             {\r
 208                 try {\r
 209                     SequenceSet target = (SequenceSet) object;\r
 210                     target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
 211                 } catch (java.lang.Exception ex) {\r
 212                     throw new IllegalStateException(ex.toString());\r
 213                 }\r
 214             }\r
 215             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 216                 try {\r
 217                     SequenceSet target = (SequenceSet) object;\r
 218                     target.removeAllSequenceSetProperties();\r
 219                 } catch (java.lang.Exception ex) {\r
 220                     throw new IllegalStateException(ex.toString());\r
 221                 }\r
 222             }\r
 223             public java.lang.Object newInstance(java.lang.Object parent) {\r
 224                 return new jalview.schemabinding.version2.SequenceSetProperties();\r
 225             }\r
 226         };\r
 227         desc.setHandler(handler);\r
 228         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 229         desc.setMultivalued(true);\r
 230         addFieldDescriptor(desc);\r
 231         \r
 232         //-- validation code for: _sequenceSetPropertiesList\r
 233         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 234         fieldValidator.setMinOccurs(0);\r
 235         { //-- local scope\r
 236         }\r
 237         desc.setValidator(fieldValidator);\r
 238     }\r
 239 \r
 240 \r
 241       //-----------/\r
 242      //- Methods -/\r
 243     //-----------/\r
 244 \r
 245     /**\r
 246      * Method getAccessMode.\r
 247      * \r
 248      * @return the access mode specified for this class.\r
 249      */\r
 250     public org.exolab.castor.mapping.AccessMode getAccessMode(\r
 251     ) {\r
 252         return null;\r
 253     }\r
 254 \r
 255     /**\r
 256      * Method getIdentity.\r
 257      * \r
 258      * @return the identity field, null if this class has no\r
 259      * identity.\r
 260      */\r
 261     public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
 262     ) {\r
 263         return _identity;\r
 264     }\r
 265 \r
 266     /**\r
 267      * Method getJavaClass.\r
 268      * \r
 269      * @return the Java class represented by this descriptor.\r
 270      */\r
 271     public java.lang.Class getJavaClass(\r
 272     ) {\r
 273         return jalview.schemabinding.version2.SequenceSet.class;\r
 274     }\r
 275 \r
 276     /**\r
 277      * Method getNameSpacePrefix.\r
 278      * \r
 279      * @return the namespace prefix to use when marshaling as XML.\r
 280      */\r
 281     public java.lang.String getNameSpacePrefix(\r
 282     ) {\r
 283         return _nsPrefix;\r
 284     }\r
 285 \r
 286     /**\r
 287      * Method getNameSpaceURI.\r
 288      * \r
 289      * @return the namespace URI used when marshaling and\r
 290      * unmarshaling as XML.\r
 291      */\r
 292     public java.lang.String getNameSpaceURI(\r
 293     ) {\r
 294         return _nsURI;\r
 295     }\r
 296 \r
 297     /**\r
 298      * Method getValidator.\r
 299      * \r
 300      * @return a specific validator for the class described by this\r
 301      * ClassDescriptor.\r
 302      */\r
 303     public org.exolab.castor.xml.TypeValidator getValidator(\r
 304     ) {\r
 305         return this;\r
 306     }\r
 307 \r
 308     /**\r
 309      * Method getXMLName.\r
 310      * \r
 311      * @return the XML Name for the Class being described.\r
 312      */\r
 313     public java.lang.String getXMLName(\r
 314     ) {\r
 315         return _xmlName;\r
 316     }\r
 317 \r
 318     /**\r
 319      * Method isElementDefinition.\r
 320      * \r
 321      * @return true if XML schema definition of this Class is that\r
 322      * of a global\r
 323      * element or element with anonymous type definition.\r
 324      */\r
 325     public boolean isElementDefinition(\r
 326     ) {\r
 327         return _elementDefinition;\r
 328     }\r
 329 \r
 330 }\r