src/jalview/ws2/actions/secstructpred/SecStructPredAction.java

   1 package jalview.ws2.actions.secstructpred;
   2
   3 import java.util.List;
   4 import java.util.Objects;
   5
   6 import jalview.api.AlignViewportI;
   7 import jalview.datamodel.AlignmentI;
   8 import jalview.viewmodel.AlignmentViewport;
   9 import jalview.ws.params.ArgumentI;
  10 import jalview.ws2.actions.BaseAction;
  11 import jalview.ws2.actions.BaseTask;
  12 import jalview.ws2.api.Credentials;
  13 import jalview.ws2.client.api.SecStructPredWebServiceClientI;
  14 import jalview.ws2.client.api.WebServiceClientI;
  15
  16 public class SecStructPredAction extends BaseAction<AlignmentI>
  17 {
  18   public static class Builder extends BaseAction.Builder<SecStructPredAction>
  19   {
  20     protected SecStructPredWebServiceClientI client;
  21
  22     protected boolean msaMode;
  23
  24     private Builder(SecStructPredWebServiceClientI client)
  25     {
  26       super();
  27       Objects.requireNonNull(client);
  28       this.client = client;
  29     }
  30
  31     public void msaMode(boolean msa)
  32     {
  33       this.msaMode = msa;
  34     }
  35
  36     public SecStructPredAction build()
  37     {
  38       return new SecStructPredAction(this);
  39     }
  40   }
  41
  42   public static Builder newBuilder(SecStructPredWebServiceClientI client)
  43   {
  44     return new Builder(client);
  45   }
  46
  47   protected final SecStructPredWebServiceClientI client;
  48
  49   protected boolean msaMode;
  50
  51   public SecStructPredAction(Builder builder)
  52   {
  53     super(builder);
  54     client = builder.client;
  55     msaMode = builder.msaMode;
  56   }
  57
  58   public BaseTask<?, AlignmentI> createTask(AlignViewportI viewport,
  59       List<ArgumentI> args, Credentials credentials)
  60   {
  61     if (msaMode)
  62       return new SecStructPredMsaTask(client, args, credentials, viewport);
  63     else
  64       return new SecStructPredPDBSearchTask(client, args, credentials, viewport);
  65   }
  66
  67   @Override
  68   public boolean isActive(AlignmentViewport viewport)
  69   {
  70     return false;
  71   }
  72 }