src/jalview/ws2/slivka/SlivkaWS.java

   1 package jalview.ws2.slivka;
   2
   3 import java.io.IOException;
   4 import java.util.Arrays;
   5 import java.util.EnumMap;
   6 import java.util.HashSet;
   7 import java.util.List;
   8 import java.util.Set;
   9
  10 import jalview.datamodel.SequenceI;
  11 import jalview.ws.gui.WsJob;
  12 import jalview.ws.params.ArgumentI;
  13 import jalview.ws.params.ParamDatastoreI;
  14 import jalview.ws.params.WsParamSetI;
  15 import jalview.ws.slivkaws.SlivkaDatastore;
  16 import jalview.ws2.JalviewWebServiceI;
  17 import jalview.ws2.WSJobID;
  18 import jalview.ws2.WSJobTrackerI;
  19 import uk.ac.dundee.compbio.slivkaclient.JobState;
  20 import uk.ac.dundee.compbio.slivkaclient.SlivkaClient;
  21 import uk.ac.dundee.compbio.slivkaclient.SlivkaService;
  22
  23 public abstract class SlivkaWS<R> implements JalviewWebServiceI<R>
  24 {
  25   protected final SlivkaClient client;
  26   protected final SlivkaService service;
  27   protected SlivkaDatastore store = null;
  28   protected final String name;
  29   protected final String description;
  30   protected final String operation;
  31   protected int type = 0;
  32
  33   protected static final EnumMap<JobState, WsJob.JobState> stateMap = new EnumMap<>(JobState.class);
  34   {
  35     stateMap.put(JobState.PENDING, WsJob.JobState.QUEUED);
  36     stateMap.put(JobState.REJECTED, WsJob.JobState.INVALID);
  37     stateMap.put(JobState.ACCEPTED, WsJob.JobState.QUEUED);
  38     stateMap.put(JobState.QUEUED, WsJob.JobState.QUEUED);
  39     stateMap.put(JobState.RUNNING, WsJob.JobState.RUNNING);
  40     stateMap.put(JobState.COMPLETED, WsJob.JobState.FINISHED);
  41     stateMap.put(JobState.INTERRUPTED, WsJob.JobState.CANCELLED);
  42     stateMap.put(JobState.DELETED, WsJob.JobState.CANCELLED);
  43     stateMap.put(JobState.FAILED, WsJob.JobState.FAILED);
  44     stateMap.put(JobState.ERROR, WsJob.JobState.SERVERERROR);
  45     stateMap.put(JobState.UNKNOWN, WsJob.JobState.UNKNOWN);
  46   }
  47   protected final Set<WsJob.JobState> failedStates = new HashSet<>(Arrays.asList(
  48       WsJob.JobState.INVALID, WsJob.JobState.BROKEN, WsJob.JobState.FAILED,
  49       WsJob.JobState.SERVERERROR, WsJob.JobState.CANCELLED
  50   ));
  51
  52   public SlivkaWS(SlivkaClient client, SlivkaService service, String operation) {
  53     this.client = client;
  54     this.service = service;
  55     this.operation = operation;
  56     this.name = service.getName();
  57     this.description = "";
  58   }
  59
  60   @Override
  61   public String getHostName()
  62   {
  63     return client.getUrl().toString();
  64   }
  65
  66   @Override
  67   public String getName()
  68   {
  69     // TODO Auto-generated method stub
  70     return null;
  71   }
  72
  73   @Override
  74   public String getDescription()
  75   {
  76     // TODO Auto-generated method stub
  77     return null;
  78   }
  79
  80   @Override
  81   public String getOperationType()
  82   {
  83     // TODO Auto-generated method stub
  84     return null;
  85   }
  86
  87   @Override
  88   public int getTypeFlags()
  89   {
  90     // TODO Auto-generated method stub
  91     return 0;
  92   }
  93
  94   @Override
  95   public boolean canSubmitGaps()
  96   {
  97     // TODO Auto-generated method stub
  98     return false;
  99   }
 100
 101   @Override
 102   public int getMinSequences()
 103   {
 104     // TODO Auto-generated method stub
 105     return 0;
 106   }
 107
 108   @Override
 109   public int getMaxSequences()
 110   {
 111     // TODO Auto-generated method stub
 112     return 0;
 113   }
 114
 115   @Override
 116   public boolean hasParameters()
 117   {
 118     // TODO Auto-generated method stub
 119     return false;
 120   }
 121
 122   @Override
 123   public ParamDatastoreI getParamStore()
 124   {
 125     // TODO Auto-generated method stub
 126     return null;
 127   }
 128
 129   @Override
 130   public WSJobID submit(List<SequenceI> sequences, WsParamSetI preset,
 131           List<ArgumentI> parameters) throws IOException
 132   {
 133     // TODO Auto-generated method stub
 134     return null;
 135   }
 136
 137   @Override
 138   public void updateProgress(WSJobID id, WSJobTrackerI tracker)
 139           throws IOException
 140   {
 141     // TODO Auto-generated method stub
 142
 143   }
 144
 145   @Override
 146   public R getResult(WSJobID id) throws IOException
 147   {
 148     // TODO Auto-generated method stub
 149     return null;
 150   }
 151
 152   @Override
 153   public void cancel(WSJobID id) throws IOException
 154   {
 155     // TODO Auto-generated method stub
 156
 157   }
 158
 159   @Override
 160   public boolean handleSubmissionError(WSJobID id, Throwable th,
 161           WSJobTrackerI tracker)
 162   {
 163     // TODO Auto-generated method stub
 164     return false;
 165   }
 166
 167   @Override
 168   public boolean handleCollectionError(WSJobID id, Throwable th,
 169           WSJobTrackerI tracker)
 170   {
 171     // TODO Auto-generated method stub
 172     return false;
 173   }
 174
 175 }