src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java

   1 /*\r
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)\r
   3  * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle\r
   4  * \r
   5  * This file is part of Jalview.\r
   6  * \r
   7  * Jalview is free software: you can redistribute it and/or\r
   8  * modify it under the terms of the GNU General Public License \r
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
  10  * \r
  11  * Jalview is distributed in the hope that it will be useful, but \r
  12  * WITHOUT ANY WARRANTY; without even the implied warranty \r
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
  14  * PURPOSE.  See the GNU General Public License for more details.\r
  15  * \r
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.\r
  17  */\r
  18 package uk.ac.ebi.www.picr.AccessionMappingService;\r
  19 \r
  20 public class AccessionMapperBindingStub extends org.apache.axis.client.Stub\r
  21         implements\r
  22         uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface\r
  23 {\r
  24   private java.util.Vector cachedSerClasses = new java.util.Vector();\r
  25 \r
  26   private java.util.Vector cachedSerQNames = new java.util.Vector();\r
  27 \r
  28   private java.util.Vector cachedSerFactories = new java.util.Vector();\r
  29 \r
  30   private java.util.Vector cachedDeserFactories = new java.util.Vector();\r
  31 \r
  32   static org.apache.axis.description.OperationDesc[] _operations;\r
  33 \r
  34   static\r
  35   {\r
  36     _operations = new org.apache.axis.description.OperationDesc[3];\r
  37     _initOperationDesc1();\r
  38   }\r
  39 \r
  40   private static void _initOperationDesc1()\r
  41   {\r
  42     org.apache.axis.description.OperationDesc oper;\r
  43     oper = new org.apache.axis.description.OperationDesc();\r
  44     oper.setName("getUPIForSequence");\r
  45     oper.addParameter(\r
  46             new javax.xml.namespace.QName(\r
  47                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  48                     "sequence"), new javax.xml.namespace.QName(\r
  49                     "http://www.w3.org/2001/XMLSchema", "string"),\r
  50             java.lang.String.class,\r
  51             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  52     oper.addParameter(new javax.xml.namespace.QName(\r
  53             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  54             "searchDatabases"), new javax.xml.namespace.QName(\r
  55             "http://www.w3.org/2001/XMLSchema", "string"),\r
  56             java.lang.String[].class,\r
  57             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  58     oper.addParameter(\r
  59             new javax.xml.namespace.QName(\r
  60                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  61                     "taxonId"), new javax.xml.namespace.QName(\r
  62                     "http://www.w3.org/2001/XMLSchema", "string"),\r
  63             java.lang.String.class,\r
  64             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  65     oper.addParameter(new javax.xml.namespace.QName(\r
  66             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  67             "onlyActive"), new javax.xml.namespace.QName(\r
  68             "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
  69             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  70     oper.setReturnType(new javax.xml.namespace.QName(\r
  71             "http://model.picr.ebi.ac.uk", "UPEntry"));\r
  72     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);\r
  73     oper.setReturnQName(new javax.xml.namespace.QName(\r
  74             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  75             "getUPIForSequenceReturn"));\r
  76     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
  77     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
  78     _operations[0] = oper;\r
  79 \r
  80     oper = new org.apache.axis.description.OperationDesc();\r
  81     oper.setName("getUPIForAccession");\r
  82     oper.addParameter(new javax.xml.namespace.QName(\r
  83             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  84             "accession"), new javax.xml.namespace.QName(\r
  85             "http://www.w3.org/2001/XMLSchema", "string"),\r
  86             java.lang.String.class,\r
  87             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  88     oper.addParameter(new javax.xml.namespace.QName(\r
  89             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  90             "ac_version"), new javax.xml.namespace.QName(\r
  91             "http://www.w3.org/2001/XMLSchema", "string"),\r
  92             java.lang.String.class,\r
  93             org.apache.axis.description.ParameterDesc.IN, false, false);\r
  94     oper.addParameter(new javax.xml.namespace.QName(\r
  95             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
  96             "searchDatabases"), new javax.xml.namespace.QName(\r
  97             "http://www.w3.org/2001/XMLSchema", "string"),\r
  98             java.lang.String[].class,\r
  99             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 100     oper.addParameter(\r
 101             new javax.xml.namespace.QName(\r
 102                     "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 103                     "taxonId"), new javax.xml.namespace.QName(\r
 104                     "http://www.w3.org/2001/XMLSchema", "string"),\r
 105             java.lang.String.class,\r
 106             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 107     oper.addParameter(new javax.xml.namespace.QName(\r
 108             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 109             "onlyActive"), new javax.xml.namespace.QName(\r
 110             "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,\r
 111             org.apache.axis.description.ParameterDesc.IN, false, false);\r
 112     oper.setReturnType(new javax.xml.namespace.QName(\r
 113             "http://model.picr.ebi.ac.uk", "UPEntry"));\r
 114     oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);\r
 115     oper.setReturnQName(new javax.xml.namespace.QName(\r
 116             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 117             "getUPIForAccessionReturn"));\r
 118     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
 119     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
 120     _operations[1] = oper;\r
 121 \r
 122     oper = new org.apache.axis.description.OperationDesc();\r
 123     oper.setName("getMappedDatabaseNames");\r
 124     oper.setReturnType(new javax.xml.namespace.QName(\r
 125             "http://www.w3.org/2001/XMLSchema", "string"));\r
 126     oper.setReturnClass(java.lang.String[].class);\r
 127     oper.setReturnQName(new javax.xml.namespace.QName(\r
 128             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 129             "mappedDatabases"));\r
 130     oper.setStyle(org.apache.axis.constants.Style.WRAPPED);\r
 131     oper.setUse(org.apache.axis.constants.Use.LITERAL);\r
 132     _operations[2] = oper;\r
 133 \r
 134   }\r
 135 \r
 136   public AccessionMapperBindingStub() throws org.apache.axis.AxisFault\r
 137   {\r
 138     this(null);\r
 139   }\r
 140 \r
 141   public AccessionMapperBindingStub(java.net.URL endpointURL,\r
 142           javax.xml.rpc.Service service) throws org.apache.axis.AxisFault\r
 143   {\r
 144     this(service);\r
 145     super.cachedEndpoint = endpointURL;\r
 146   }\r
 147 \r
 148   public AccessionMapperBindingStub(javax.xml.rpc.Service service)\r
 149           throws org.apache.axis.AxisFault\r
 150   {\r
 151     if (service == null)\r
 152     {\r
 153       super.service = new org.apache.axis.client.Service();\r
 154     }\r
 155     else\r
 156     {\r
 157       super.service = service;\r
 158     }\r
 159     java.lang.Class cls;\r
 160     javax.xml.namespace.QName qName;\r
 161     java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;\r
 162     java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;\r
 163     java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;\r
 164     java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;\r
 165     java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;\r
 166     java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;\r
 167     java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;\r
 168     java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;\r
 169     java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;\r
 170     java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;\r
 171     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
 172             "UPEntry");\r
 173     cachedSerQNames.add(qName);\r
 174     cls = uk.ac.ebi.picr.model.UPEntry.class;\r
 175     cachedSerClasses.add(cls);\r
 176     cachedSerFactories.add(beansf);\r
 177     cachedDeserFactories.add(beandf);\r
 178 \r
 179     qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",\r
 180             "CrossReference");\r
 181     cachedSerQNames.add(qName);\r
 182     cls = uk.ac.ebi.picr.model.CrossReference.class;\r
 183     cachedSerClasses.add(cls);\r
 184     cachedSerFactories.add(beansf);\r
 185     cachedDeserFactories.add(beandf);\r
 186 \r
 187   }\r
 188 \r
 189   protected org.apache.axis.client.Call createCall()\r
 190           throws java.rmi.RemoteException\r
 191   {\r
 192     try\r
 193     {\r
 194       org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service\r
 195               .createCall();\r
 196       if (super.maintainSessionSet)\r
 197       {\r
 198         _call.setMaintainSession(super.maintainSession);\r
 199       }\r
 200       if (super.cachedUsername != null)\r
 201       {\r
 202         _call.setUsername(super.cachedUsername);\r
 203       }\r
 204       if (super.cachedPassword != null)\r
 205       {\r
 206         _call.setPassword(super.cachedPassword);\r
 207       }\r
 208       if (super.cachedEndpoint != null)\r
 209       {\r
 210         _call.setTargetEndpointAddress(super.cachedEndpoint);\r
 211       }\r
 212       if (super.cachedTimeout != null)\r
 213       {\r
 214         _call.setTimeout(super.cachedTimeout);\r
 215       }\r
 216       if (super.cachedPortName != null)\r
 217       {\r
 218         _call.setPortName(super.cachedPortName);\r
 219       }\r
 220       java.util.Enumeration keys = super.cachedProperties.keys();\r
 221       while (keys.hasMoreElements())\r
 222       {\r
 223         java.lang.String key = (java.lang.String) keys.nextElement();\r
 224         _call.setProperty(key, super.cachedProperties.get(key));\r
 225       }\r
 226       // All the type mapping information is registered\r
 227       // when the first call is made.\r
 228       // The type mapping information is actually registered in\r
 229       // the TypeMappingRegistry of the service, which\r
 230       // is the reason why registration is only needed for the first call.\r
 231       synchronized (this)\r
 232       {\r
 233         if (firstCall())\r
 234         {\r
 235           // must set encoding style before registering serializers\r
 236           _call.setEncodingStyle(null);\r
 237           for (int i = 0; i < cachedSerFactories.size(); ++i)\r
 238           {\r
 239             java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);\r
 240             javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames\r
 241                     .get(i);\r
 242             java.lang.Class sf = (java.lang.Class) cachedSerFactories\r
 243                     .get(i);\r
 244             java.lang.Class df = (java.lang.Class) cachedDeserFactories\r
 245                     .get(i);\r
 246             _call.registerTypeMapping(cls, qName, sf, df, false);\r
 247           }\r
 248         }\r
 249       }\r
 250       return _call;\r
 251     } catch (java.lang.Throwable _t)\r
 252     {\r
 253       throw new org.apache.axis.AxisFault(\r
 254               "Failure trying to get the Call object", _t);\r
 255     }\r
 256   }\r
 257 \r
 258   public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(\r
 259           java.lang.String sequence, java.lang.String[] searchDatabases,\r
 260           java.lang.String taxonId, boolean onlyActive)\r
 261           throws java.rmi.RemoteException\r
 262   {\r
 263     if (super.cachedEndpoint == null)\r
 264     {\r
 265       throw new org.apache.axis.NoEndPointException();\r
 266     }\r
 267     org.apache.axis.client.Call _call = createCall();\r
 268     _call.setOperation(_operations[0]);\r
 269     _call.setUseSOAPAction(true);\r
 270     _call.setSOAPActionURI("getUPIForSequence");\r
 271     _call.setEncodingStyle(null);\r
 272     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 273             Boolean.FALSE);\r
 274     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 275             Boolean.FALSE);\r
 276     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 277     _call.setOperationName(new javax.xml.namespace.QName(\r
 278             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 279             "getUPIForSequence"));\r
 280 \r
 281     setRequestHeaders(_call);\r
 282     setAttachments(_call);\r
 283     java.lang.Object _resp = _call\r
 284             .invoke(new java.lang.Object[]\r
 285             { sequence, searchDatabases, taxonId,\r
 286                 new java.lang.Boolean(onlyActive) });\r
 287 \r
 288     if (_resp instanceof java.rmi.RemoteException)\r
 289     {\r
 290       throw (java.rmi.RemoteException) _resp;\r
 291     }\r
 292     else\r
 293     {\r
 294       extractAttachments(_call);\r
 295       try\r
 296       {\r
 297         return (uk.ac.ebi.picr.model.UPEntry) _resp;\r
 298       } catch (java.lang.Exception _exception)\r
 299       {\r
 300         return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils\r
 301                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);\r
 302       }\r
 303     }\r
 304   }\r
 305 \r
 306   public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(\r
 307           java.lang.String accession, java.lang.String ac_version,\r
 308           java.lang.String[] searchDatabases, java.lang.String taxonId,\r
 309           boolean onlyActive) throws java.rmi.RemoteException\r
 310   {\r
 311     if (super.cachedEndpoint == null)\r
 312     {\r
 313       throw new org.apache.axis.NoEndPointException();\r
 314     }\r
 315     org.apache.axis.client.Call _call = createCall();\r
 316     _call.setOperation(_operations[1]);\r
 317     _call.setUseSOAPAction(true);\r
 318     _call.setSOAPActionURI("getUPIForAccession");\r
 319     _call.setEncodingStyle(null);\r
 320     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 321             Boolean.FALSE);\r
 322     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 323             Boolean.FALSE);\r
 324     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 325     _call.setOperationName(new javax.xml.namespace.QName(\r
 326             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 327             "getUPIForAccession"));\r
 328 \r
 329     setRequestHeaders(_call);\r
 330     setAttachments(_call);\r
 331     java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
 332     { accession, ac_version, searchDatabases, taxonId,\r
 333         new java.lang.Boolean(onlyActive) });\r
 334 \r
 335     if (_resp instanceof java.rmi.RemoteException)\r
 336     {\r
 337       throw (java.rmi.RemoteException) _resp;\r
 338     }\r
 339     else\r
 340     {\r
 341       extractAttachments(_call);\r
 342       try\r
 343       {\r
 344         return (uk.ac.ebi.picr.model.UPEntry[]) _resp;\r
 345       } catch (java.lang.Exception _exception)\r
 346       {\r
 347         return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils\r
 348                 .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);\r
 349       }\r
 350     }\r
 351   }\r
 352 \r
 353   public java.lang.String[] getMappedDatabaseNames()\r
 354           throws java.rmi.RemoteException\r
 355   {\r
 356     if (super.cachedEndpoint == null)\r
 357     {\r
 358       throw new org.apache.axis.NoEndPointException();\r
 359     }\r
 360     org.apache.axis.client.Call _call = createCall();\r
 361     _call.setOperation(_operations[2]);\r
 362     _call.setUseSOAPAction(true);\r
 363     _call.setSOAPActionURI("getMappedDatabaseNames");\r
 364     _call.setEncodingStyle(null);\r
 365     _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,\r
 366             Boolean.FALSE);\r
 367     _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,\r
 368             Boolean.FALSE);\r
 369     _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);\r
 370     _call.setOperationName(new javax.xml.namespace.QName(\r
 371             "http://www.ebi.ac.uk/picr/AccessionMappingService",\r
 372             "getMappedDatabaseNames"));\r
 373 \r
 374     setRequestHeaders(_call);\r
 375     setAttachments(_call);\r
 376     java.lang.Object _resp = _call.invoke(new java.lang.Object[]\r
 377     {});\r
 378 \r
 379     if (_resp instanceof java.rmi.RemoteException)\r
 380     {\r
 381       throw (java.rmi.RemoteException) _resp;\r
 382     }\r
 383     else\r
 384     {\r
 385       extractAttachments(_call);\r
 386       try\r
 387       {\r
 388         return (java.lang.String[]) _resp;\r
 389       } catch (java.lang.Exception _exception)\r
 390       {\r
 391         return (java.lang.String[]) org.apache.axis.utils.JavaUtils\r
 392                 .convert(_resp, java.lang.String[].class);\r
 393       }\r
 394     }\r
 395   }\r
 396 \r
 397 }\r