2 * AccessionMapperBindingStub.java
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4 * This file was auto-generated from WSDL
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5 * by the Apache Axis 1.2RC2 Nov 16, 2004 (12:19:44 EST) WSDL2Java emitter.
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8 package uk.ac.ebi.www.picr.AccessionMappingService;
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10 public class AccessionMapperBindingStub extends org.apache.axis.client.Stub
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12 uk.ac.ebi.www.picr.AccessionMappingService.AccessionMapperInterface
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14 private java.util.Vector cachedSerClasses = new java.util.Vector();
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16 private java.util.Vector cachedSerQNames = new java.util.Vector();
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18 private java.util.Vector cachedSerFactories = new java.util.Vector();
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20 private java.util.Vector cachedDeserFactories = new java.util.Vector();
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22 static org.apache.axis.description.OperationDesc[] _operations;
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26 _operations = new org.apache.axis.description.OperationDesc[3];
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27 _initOperationDesc1();
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30 private static void _initOperationDesc1()
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32 org.apache.axis.description.OperationDesc oper;
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33 oper = new org.apache.axis.description.OperationDesc();
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34 oper.setName("getUPIForSequence");
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36 new javax.xml.namespace.QName(
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37 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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38 "sequence"), new javax.xml.namespace.QName(
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39 "http://www.w3.org/2001/XMLSchema", "string"),
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40 java.lang.String.class,
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41 org.apache.axis.description.ParameterDesc.IN, false, false);
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42 oper.addParameter(new javax.xml.namespace.QName(
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43 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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44 "searchDatabases"), new javax.xml.namespace.QName(
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45 "http://www.w3.org/2001/XMLSchema", "string"),
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46 java.lang.String[].class,
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47 org.apache.axis.description.ParameterDesc.IN, false, false);
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49 new javax.xml.namespace.QName(
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50 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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51 "taxonId"), new javax.xml.namespace.QName(
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52 "http://www.w3.org/2001/XMLSchema", "string"),
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53 java.lang.String.class,
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54 org.apache.axis.description.ParameterDesc.IN, false, false);
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55 oper.addParameter(new javax.xml.namespace.QName(
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56 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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57 "onlyActive"), new javax.xml.namespace.QName(
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58 "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
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59 org.apache.axis.description.ParameterDesc.IN, false, false);
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60 oper.setReturnType(new javax.xml.namespace.QName(
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61 "http://model.picr.ebi.ac.uk", "UPEntry"));
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62 oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry.class);
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63 oper.setReturnQName(new javax.xml.namespace.QName(
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64 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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65 "getUPIForSequenceReturn"));
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66 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
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67 oper.setUse(org.apache.axis.constants.Use.LITERAL);
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68 _operations[0] = oper;
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70 oper = new org.apache.axis.description.OperationDesc();
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71 oper.setName("getUPIForAccession");
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72 oper.addParameter(new javax.xml.namespace.QName(
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73 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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74 "accession"), new javax.xml.namespace.QName(
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75 "http://www.w3.org/2001/XMLSchema", "string"),
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76 java.lang.String.class,
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77 org.apache.axis.description.ParameterDesc.IN, false, false);
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78 oper.addParameter(new javax.xml.namespace.QName(
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79 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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80 "ac_version"), new javax.xml.namespace.QName(
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81 "http://www.w3.org/2001/XMLSchema", "string"),
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82 java.lang.String.class,
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83 org.apache.axis.description.ParameterDesc.IN, false, false);
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84 oper.addParameter(new javax.xml.namespace.QName(
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85 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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86 "searchDatabases"), new javax.xml.namespace.QName(
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87 "http://www.w3.org/2001/XMLSchema", "string"),
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88 java.lang.String[].class,
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89 org.apache.axis.description.ParameterDesc.IN, false, false);
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91 new javax.xml.namespace.QName(
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92 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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93 "taxonId"), new javax.xml.namespace.QName(
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94 "http://www.w3.org/2001/XMLSchema", "string"),
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95 java.lang.String.class,
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96 org.apache.axis.description.ParameterDesc.IN, false, false);
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97 oper.addParameter(new javax.xml.namespace.QName(
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98 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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99 "onlyActive"), new javax.xml.namespace.QName(
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100 "http://www.w3.org/2001/XMLSchema", "boolean"), boolean.class,
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101 org.apache.axis.description.ParameterDesc.IN, false, false);
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102 oper.setReturnType(new javax.xml.namespace.QName(
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103 "http://model.picr.ebi.ac.uk", "UPEntry"));
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104 oper.setReturnClass(uk.ac.ebi.picr.model.UPEntry[].class);
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105 oper.setReturnQName(new javax.xml.namespace.QName(
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106 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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107 "getUPIForAccessionReturn"));
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108 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
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109 oper.setUse(org.apache.axis.constants.Use.LITERAL);
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110 _operations[1] = oper;
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112 oper = new org.apache.axis.description.OperationDesc();
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113 oper.setName("getMappedDatabaseNames");
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114 oper.setReturnType(new javax.xml.namespace.QName(
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115 "http://www.w3.org/2001/XMLSchema", "string"));
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116 oper.setReturnClass(java.lang.String[].class);
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117 oper.setReturnQName(new javax.xml.namespace.QName(
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118 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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119 "mappedDatabases"));
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120 oper.setStyle(org.apache.axis.constants.Style.WRAPPED);
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121 oper.setUse(org.apache.axis.constants.Use.LITERAL);
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122 _operations[2] = oper;
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126 public AccessionMapperBindingStub() throws org.apache.axis.AxisFault
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131 public AccessionMapperBindingStub(java.net.URL endpointURL,
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132 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
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135 super.cachedEndpoint = endpointURL;
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138 public AccessionMapperBindingStub(javax.xml.rpc.Service service)
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139 throws org.apache.axis.AxisFault
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141 if (service == null)
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143 super.service = new org.apache.axis.client.Service();
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147 super.service = service;
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149 java.lang.Class cls;
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150 javax.xml.namespace.QName qName;
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151 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
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152 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
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153 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
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154 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
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155 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
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156 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
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157 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
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158 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
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159 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
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160 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
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161 qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
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163 cachedSerQNames.add(qName);
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164 cls = uk.ac.ebi.picr.model.UPEntry.class;
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165 cachedSerClasses.add(cls);
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166 cachedSerFactories.add(beansf);
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167 cachedDeserFactories.add(beandf);
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169 qName = new javax.xml.namespace.QName("http://model.picr.ebi.ac.uk",
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171 cachedSerQNames.add(qName);
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172 cls = uk.ac.ebi.picr.model.CrossReference.class;
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173 cachedSerClasses.add(cls);
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174 cachedSerFactories.add(beansf);
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175 cachedDeserFactories.add(beandf);
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179 protected org.apache.axis.client.Call createCall()
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180 throws java.rmi.RemoteException
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184 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
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186 if (super.maintainSessionSet)
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188 _call.setMaintainSession(super.maintainSession);
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190 if (super.cachedUsername != null)
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192 _call.setUsername(super.cachedUsername);
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194 if (super.cachedPassword != null)
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196 _call.setPassword(super.cachedPassword);
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198 if (super.cachedEndpoint != null)
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200 _call.setTargetEndpointAddress(super.cachedEndpoint);
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202 if (super.cachedTimeout != null)
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204 _call.setTimeout(super.cachedTimeout);
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206 if (super.cachedPortName != null)
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208 _call.setPortName(super.cachedPortName);
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210 java.util.Enumeration keys = super.cachedProperties.keys();
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211 while (keys.hasMoreElements())
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213 java.lang.String key = (java.lang.String) keys.nextElement();
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214 _call.setProperty(key, super.cachedProperties.get(key));
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216 // All the type mapping information is registered
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217 // when the first call is made.
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218 // The type mapping information is actually registered in
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219 // the TypeMappingRegistry of the service, which
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220 // is the reason why registration is only needed for the first call.
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221 synchronized (this)
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225 // must set encoding style before registering serializers
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226 _call.setEncodingStyle(null);
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227 for (int i = 0; i < cachedSerFactories.size(); ++i)
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229 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
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230 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
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232 java.lang.Class sf = (java.lang.Class) cachedSerFactories
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234 java.lang.Class df = (java.lang.Class) cachedDeserFactories
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236 _call.registerTypeMapping(cls, qName, sf, df, false);
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241 } catch (java.lang.Throwable _t)
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243 throw new org.apache.axis.AxisFault(
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244 "Failure trying to get the Call object", _t);
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248 public uk.ac.ebi.picr.model.UPEntry getUPIForSequence(
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249 java.lang.String sequence, java.lang.String[] searchDatabases,
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250 java.lang.String taxonId, boolean onlyActive)
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251 throws java.rmi.RemoteException
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253 if (super.cachedEndpoint == null)
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255 throw new org.apache.axis.NoEndPointException();
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257 org.apache.axis.client.Call _call = createCall();
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258 _call.setOperation(_operations[0]);
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259 _call.setUseSOAPAction(true);
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260 _call.setSOAPActionURI("getUPIForSequence");
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261 _call.setEncodingStyle(null);
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262 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
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264 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
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267 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
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268 _call.setOperationName(new javax.xml.namespace.QName(
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269 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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270 "getUPIForSequence"));
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272 setRequestHeaders(_call);
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273 setAttachments(_call);
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274 java.lang.Object _resp = _call
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275 .invoke(new java.lang.Object[]
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276 { sequence, searchDatabases, taxonId,
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277 new java.lang.Boolean(onlyActive) });
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279 if (_resp instanceof java.rmi.RemoteException)
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281 throw (java.rmi.RemoteException) _resp;
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285 extractAttachments(_call);
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288 return (uk.ac.ebi.picr.model.UPEntry) _resp;
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289 } catch (java.lang.Exception _exception)
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291 return (uk.ac.ebi.picr.model.UPEntry) org.apache.axis.utils.JavaUtils
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292 .convert(_resp, uk.ac.ebi.picr.model.UPEntry.class);
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297 public uk.ac.ebi.picr.model.UPEntry[] getUPIForAccession(
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298 java.lang.String accession, java.lang.String ac_version,
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299 java.lang.String[] searchDatabases, java.lang.String taxonId,
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300 boolean onlyActive) throws java.rmi.RemoteException
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302 if (super.cachedEndpoint == null)
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304 throw new org.apache.axis.NoEndPointException();
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306 org.apache.axis.client.Call _call = createCall();
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307 _call.setOperation(_operations[1]);
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308 _call.setUseSOAPAction(true);
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309 _call.setSOAPActionURI("getUPIForAccession");
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310 _call.setEncodingStyle(null);
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311 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
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313 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
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316 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
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317 _call.setOperationName(new javax.xml.namespace.QName(
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318 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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319 "getUPIForAccession"));
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321 setRequestHeaders(_call);
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322 setAttachments(_call);
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323 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
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324 { accession, ac_version, searchDatabases, taxonId,
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325 new java.lang.Boolean(onlyActive) });
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327 if (_resp instanceof java.rmi.RemoteException)
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329 throw (java.rmi.RemoteException) _resp;
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333 extractAttachments(_call);
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336 return (uk.ac.ebi.picr.model.UPEntry[]) _resp;
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337 } catch (java.lang.Exception _exception)
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339 return (uk.ac.ebi.picr.model.UPEntry[]) org.apache.axis.utils.JavaUtils
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340 .convert(_resp, uk.ac.ebi.picr.model.UPEntry[].class);
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345 public java.lang.String[] getMappedDatabaseNames()
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346 throws java.rmi.RemoteException
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348 if (super.cachedEndpoint == null)
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350 throw new org.apache.axis.NoEndPointException();
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352 org.apache.axis.client.Call _call = createCall();
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353 _call.setOperation(_operations[2]);
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354 _call.setUseSOAPAction(true);
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355 _call.setSOAPActionURI("getMappedDatabaseNames");
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356 _call.setEncodingStyle(null);
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357 _call.setProperty(org.apache.axis.client.Call.SEND_TYPE_ATTR,
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359 _call.setProperty(org.apache.axis.AxisEngine.PROP_DOMULTIREFS,
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362 .setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
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363 _call.setOperationName(new javax.xml.namespace.QName(
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364 "http://www.ebi.ac.uk/picr/AccessionMappingService",
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365 "getMappedDatabaseNames"));
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367 setRequestHeaders(_call);
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368 setAttachments(_call);
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369 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
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372 if (_resp instanceof java.rmi.RemoteException)
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374 throw (java.rmi.RemoteException) _resp;
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378 extractAttachments(_call);
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381 return (java.lang.String[]) _resp;
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382 } catch (java.lang.Exception _exception)
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384 return (java.lang.String[]) org.apache.axis.utils.JavaUtils
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385 .convert(_resp, java.lang.String[].class);
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