srcjar/fr/orsay/lri/varna/models/rna/ModeleBackbone.java

   1 package fr.orsay.lri.varna.models.rna;
   2
   3 import java.awt.Color;
   4 import java.io.Serializable;
   5 import java.util.ArrayList;
   6 import java.util.Hashtable;
   7
   8 import javax.xml.transform.sax.TransformerHandler;
   9
  10 import org.xml.sax.SAXException;
  11 import org.xml.sax.helpers.AttributesImpl;
  12
  13 import fr.orsay.lri.varna.models.rna.ModeleBackboneElement.BackboneType;
  14 import fr.orsay.lri.varna.utils.XMLUtils;
  15
  16 public class ModeleBackbone  implements Serializable{
  17
  18         /**
  19          *
  20          */
  21         private Hashtable<Integer,ModeleBackboneElement> elems = new Hashtable<Integer,ModeleBackboneElement>();
  22
  23         private static final long serialVersionUID = -614968737102943216L;
  24
  25
  26
  27         public static String XML_ELEMENT_NAME = "backbone";
  28
  29         public void toXML(TransformerHandler hd) throws SAXException
  30         {
  31                 AttributesImpl atts = new AttributesImpl();
  32                 hd.startElement("","",XML_ELEMENT_NAME,atts);
  33                 for (ModeleBackboneElement bck:elems.values())
  34                 {
  35                         bck.toXML(hd);
  36                 }
  37                 hd.endElement("","",XML_ELEMENT_NAME);
  38                 atts.clear();
  39         }
  40
  41         public void addElement(ModeleBackboneElement mbe)
  42         {
  43                 elems.put(mbe.getIndex(),mbe);
  44         }
  45
  46          public BackboneType getTypeBefore(int indexBase)
  47          {
  48                  return getTypeAfter(indexBase-1);
  49          }
  50
  51          public BackboneType getTypeAfter(int indexBase)
  52          {
  53                  if (elems.containsKey(indexBase))
  54                          return elems.get(indexBase).getType();
  55                  else
  56                          return BackboneType.SOLID_TYPE;
  57          }
  58
  59          public Color getColorBefore(int indexBase, Color defCol)
  60          {
  61                  return getColorAfter(indexBase-1,defCol);
  62          }
  63
  64          public Color getColorAfter(int indexBase, Color defCol)
  65          {
  66                  if (elems.containsKey(indexBase))
  67                  {
  68                          Color c = elems.get(indexBase).getColor();
  69                          if (c != null)
  70                                  return c;
  71                  }
  72                  return defCol;
  73          }
  74
  75 }