test/jalview/datamodel/AlignmentViewTest.java

   1 package jalview.datamodel;
   2 import static org.testng.Assert.assertEquals;
   3
   4 import org.testng.annotations.Test;
   5
   6 public class AlignmentViewTest
   7 {
   8   @Test
   9   public void testGetVisibleAlignmentGapChar()
  10   {
  11     SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
  12     CigarArray ca = new CigarArray(new CigarSimple[] { ss });
  13     AlignmentView av = new AlignmentView(ca);
  14     String dots = av.getSequenceStrings('.')[0];
  15     assertEquals(dots, "A..CDE");
  16     String dollars = av.getSequenceStrings('$')[0];
  17     assertEquals(dollars, "A$$CDE");
  18     assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
  19             .getSequenceAsString(), "A$$CDE");
  20   }
  21 }