test/jalview/datamodel/SequenceDummyTest.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.datamodel;
  22
  23 import static org.testng.AssertJUnit.assertFalse;
  24 import static org.testng.AssertJUnit.assertTrue;
  25
  26 import org.testng.annotations.Test;
  27
  28 @Test
  29 public class SequenceDummyTest
  30 {
  31   /**
  32    * test for become method
  33    */
  34   @Test(groups = { "Functional" })
  35   public void testBecome()
  36   {
  37     SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
  38     SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
  39             12, 2.3f, "none");
  40
  41     SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
  42     dummySeq.addSequenceFeature(ofeat);
  43     dummySeq.become(seq);
  44     assertFalse("Dummy sequence did not become a full sequence",
  45             dummySeq.isDummy());
  46     assertTrue("Sequence was not updated from template", seq
  47             .getSequenceAsString().equals(dummySeq.getSequenceAsString()));
  48     boolean found = false;
  49     for (SequenceFeature sf : dummySeq.getSequenceFeatures())
  50     {
  51       if (sf == ofeat)
  52       {
  53         found = true;
  54         break;
  55       }
  56     }
  57     assertTrue("Didn't retain original sequence feature", found);
  58
  59     // todo - should test all aspect of copy constructor
  60   }
  61 }