test/jalview/io/BioJsHTMLOutputTest.java

   1 package jalview.io;
   2
   3 import jalview.datamodel.Alignment;
   4 import jalview.datamodel.Sequence;
   5
   6 import java.io.IOException;
   7
   8 import org.junit.Test;
   9
  10 import com.json.JSONException;
  11
  12 public class BioJsHTMLOutputTest
  13 {
  14
  15
  16   @Test
  17   public void getJalviewAlignmentAsJsonString()
  18   {
  19     BioJsHTMLOutput bioJsHtmlOuput = new BioJsHTMLOutput(null, null);
  20     bioJsHtmlOuput.setGlobalColorScheme("Zappo");
  21
  22     Sequence[] seqs = new Sequence[1];
  23     Sequence seq = new Sequence("name", "ABCDEFGHIJKLMNOPQRSTUVWXYZ", 1, 26);
  24     // SequenceFeature seqFeature = new SequenceFeature("type", "desc",
  25     // "status", 1, 5, "jalview");
  26     // seq.addSequenceFeature(seqFeature);
  27     seq.setDatasetSequence(seq);
  28     seqs[0] = seq;
  29
  30     Alignment al = new Alignment(seqs);
  31     try
  32     {
  33       String generatedJson = bioJsHtmlOuput
  34               .getJalviewAlignmentAsJsonString(al);
  35       org.junit.Assert
  36               .assertEquals(
  37                       generatedJson.toLowerCase(),
  38                       "{\"globalColorScheme\":\"zappo\",\"seqs\":[{\"id\":\"1\",\"start\":1,\"name\":\"name/1-26\",\"features\":[],\"seq\":\"ABCDEFGHIJKLMNOPQRSTUVWXYZ\",\"end\":26}]}"
  39                               .toLowerCase());
  40       System.out.println("Output : " + generatedJson);
  41     } catch (IOException e)
  42     {
  43       e.printStackTrace();
  44     } catch (JSONException e)
  45     {
  46       e.printStackTrace();
  47     }
  48   }
  49
  50 }