test/jalview/io/IdentifyFileTest.java

   1 package jalview.io;
   2
   3 import org.testng.Assert;
   4 import org.testng.annotations.DataProvider;
   5 import org.testng.annotations.Test;
   6
   7 public class IdentifyFileTest {
   8
   9   @Test(groups =
  10   { "Functional" }, dataProvider = "identifyFiles")
  11   public void Identify(String data, String expectedFileType)
  12   {
  13     String protocol = AppletFormatAdapter.FILE;
  14     IdentifyFile ider = new IdentifyFile();
  15     String actualFiletype = ider.Identify(data, protocol);
  16     Assert.assertEquals(actualFiletype, expectedFileType,
  17             "File identification Failed!");
  18   }
  19
  20   @DataProvider(name = "identifyFiles")
  21   public Object[][] IdentifyFileDP()
  22   {
  23     return new Object[][]
  24     {
  25         { "examples/example.json", "JSON" },
  26         { "examples/plantfdx.fa", "FASTA" },
  27         { "examples/dna_interleaved.phy", "PHYLIP" },
  28         { "examples/2GIS.pdb", "PDB" },
  29         { "examples/rf00031_folded.stk", "STH" },
  30         { "examples/testdata/test.rnaml", "RNAML" },
  31         { "examples/testdata/test.aln", "CLUSTAL" },
  32         { "examples/testdata/test.pfam", "PFAM" },
  33         { "examples/testdata/test.msf", "MSF" },
  34         { "examples/testdata/test.pir", "PIR" },
  35         { "examples/testdata/test.html", "HTML" },
  36         { "examples/testdata/test.pileup", "PileUp" },
  37         { "examples/testdata/test.blc", "BLC" },
  38         { "examples/testdata/simplegff3.gff", "GFF v2 or v3" },
  39         { "examples/testdata/test.jvp", "Jalview" },
  40         {
  41             "examples/testdata/cullpdb_pc25_res3.0_R0.3_d150729_chains9361.fasta.15316",
  42             "FASTA" },
  43
  44     // { "examples/testdata/test.amsa", "AMSA" },
  45     // { "examples/test.jnet", "JnetFile" },
  46     };
  47   }
  48
  49 }