test/jalview/io/J03321.gb

   1 LOCUS       CH1L1CG                 7502 bp    DNA     circular BCT 06-APR-2020
   2 DEFINITION  Chlamydia trachomatis plasmid pCHL1, complete sequence.
   3 ACCESSION   J03321
   4 VERSION     J03321.1
   5 DBLINK      BioSample: SAMN14225621
   6 KEYWORDS    .
   7 SOURCE      Chlamydia trachomatis
   8   ORGANISM  Chlamydia trachomatis
   9             Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
  10             Chlamydia/Chlamydophila group; Chlamydia.
  11 REFERENCE   1  (bases 1 to 7502)
  12   AUTHORS   Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
  13   TITLE     Diversity of the Chlamydia trachomatis common plasmid in biovars
  14             with different pathogenicity
  15   JOURNAL   Plasmid 23 (2), 149-154 (1990)
  16    PUBMED   2194229
  17 REFERENCE   2  (bases 1 to 7502)
  18   AUTHORS   Comanducci,M., Ricci,S., Cevenini,R. and Ratti,G.
  19   TITLE     Direct Submission
  20   JOURNAL   Submitted (23-JUN-2010) Sclavo Research Centre, Siena, Italy
  21 COMMENT     Draft entry and computer-readable sequence kindly submitted by
  22             G.Ratti, 28-MAR-1990.
  23             ! CDS location split below (and this line added), for Jalview test purposes !
  24 FEATURES             Location/Qualifiers
  25      source          1..7502
  26                      /organism="Chlamydia trachomatis"
  27                      /mol_type="genomic DNA"
  28                      /serotype="D"
  29                      /isolate="G0/86"
  30                      /isolation_source="trachoma"
  31                      /db_xref="taxon:813"
  32                      /plasmid="pCHL1"
  33      CDS             join(7022..7502,
  34                      1..437)
  35                      /note="pGP7-D"
  36                      /codon_start=1
  37                      /transl_table=11
  38                      /product="hypothetical protein"
  39                      /protein_id="AAA91567.1"
  40                      /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSL
  41                      EILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLT
  42                      KGYIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQ
  43                      GIRKLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNG
  44                      RVFVSKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMR
  45                      ISCLSSRQSVCSYCSGEEVIPLVQTPTIL"
  46      CDS             complement(488..1480)
  47                      /note="pGP8-D"
  48                      /codon_start=1
  49                      /transl_table=11
  50                      /product="hypothetical protein"
  51                      /protein_id="AAA91568.1"
  52                      /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEV
  53                      IMHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKT
  54                      SWTEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSL
  55                      QTASFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQT
  56                      EKRIIITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKI
  57                      TPHVLRATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI"
  58      CDS             1579..2934
  59                      /note="pGP1-D"
  60                      /codon_start=1
  61                      /transl_table=11
  62                      /product="hypothetical protein"
  63                      /protein_id="AAA91569.1"
  64                      /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCS
  65                      HHKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVS
  66                      HTVFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSI
  67                      RSARGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKG
  68                      NFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGE
  69                      KLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFI
  70                      DYLQLINSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSD
  71                      LRDSGQIEQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKV
  72                      W"
  73      CDS             2928..3992
  74                      /note="pGP2-D"
  75                      /codon_start=1
  76                      /transl_table=11
  77                      /product="hypothetical protein"
  78                      /protein_id="AAA91570.1"
  79                      /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVI
  80                      GLDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLE
  81                      AYGVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTL
  82                      SPIIRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPA
  83                      NVYQEIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYIL
  84                      RMNRYICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERF
  85                      EEITKKSKEQMEQLEQESIN"
  86      CDS             4054..4848
  87                      /note="pGP3-D"
  88                      /codon_start=1
  89                      /transl_table=11
  90                      /product="hypothetical protein"
  91                      /protein_id="AAA91571.1"
  92                      /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVA
  93                      AKMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQ
  94                      DILDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSG
  95                      SMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTP
  96                      TTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA"
  97      CDS             4918..5226
  98                      /note="pGP4-D"
  99                      /codon_start=1
 100                      /transl_table=11
 101                      /product="hypothetical protein"
 102                      /protein_id="AAA91572.1"
 103                      /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLE
 104                      LYHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE
 105                      "
 106      CDS             5317..6048
 107                      /note="pGP5-D (gtg start codon)"
 108                      /codon_start=1
 109                      /transl_table=11
 110                      /product="hypothetical protein"
 111                      /protein_id="AAA91573.1"
 112                      /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVY
 113                      TSNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICI
 114                      IDTPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIAL
 115                      SFWDDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAED
 116                      ILKLTHEIANILHIEYERDYSQRTT"
 117      CDS             6045..6788
 118                      /note="pGP6-D (gtg start codon)"
 119                      /codon_start=1
 120                      /transl_table=11
 121                      /product="hypothetical protein"
 122                      /protein_id="AAA91574.1"
 123                      /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQS
 124                      LDRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDH
 125                      FSSTTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKG
 126                      DLKTKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEI
 127                      LRIMCSGVSLSSYNENLLQQLFELFKQKS"
 128      repeat_region   6857..6945
 129                      /note="four tandem 22bp repeats"
 130 ORIGIN
 131         1 ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca
 132        61 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat
 133       121 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat
 134       181 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg
 135       241 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt
 136       301 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt
 137       361 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa
 138       421 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac
 139       481 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt
 140       541 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc
 141       601 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa
 142       661 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca
 143       721 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta
 144       781 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct
 145       841 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta
 146       901 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg
 147       961 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg
 148      1021 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg
 149      1081 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg
 150      1141 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa
 151      1201 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg
 152      1261 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt
 153      1321 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt
 154      1381 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta
 155      1441 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac
 156      1501 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg
 157      1561 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc
 158      1621 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg
 159      1681 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa
 160      1741 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg
 161      1801 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca
 162      1861 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc
 163      1921 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca
 164      1981 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata
 165      2041 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag
 166      2101 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa
 167      2161 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc
 168      2221 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta
 169      2281 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct
 170      2341 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct
 171      2401 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct
 172      2461 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac
 173      2521 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc
 174      2581 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat
 175      2641 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc
 176      2701 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga
 177      2761 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg
 178      2821 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta
 179      2881 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata
 180      2941 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac
 181      3001 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag
 182      3061 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg
 183      3121 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc
 184      3181 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg
 185      3241 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa
 186      3301 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa
 187      3361 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta
 188      3421 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac
 189      3481 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct
 190      3541 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa
 191      3601 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag
 192      3661 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat
 193      3721 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa
 194      3781 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg
 195      3841 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag
 196      3901 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa
 197      3961 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt
 198      4021 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat
 199      4081 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc
 200      4141 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct
 201      4201 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt
 202      4261 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt
 203      4321 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa
 204      4381 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt
 205      4441 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata
 206      4501 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt
 207      4561 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag
 208      4621 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc
 209      4681 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa
 210      4741 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat
 211      4801 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt
 212      4861 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg
 213      4921 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat
 214      4981 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct
 215      5041 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa
 216      5101 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta
 217      5161 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct
 218      5221 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt
 219      5281 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt
 220      5341 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg
 221      5401 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat
 222      5461 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt
 223      5521 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta
 224      5581 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc
 225      5641 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact
 226      5701 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga
 227      5761 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg
 228      5821 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca
 229      5881 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat
 230      5941 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat
 231      6001 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa
 232      6061 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga
 233      6121 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg
 234      6181 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca
 235      6241 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc
 236      6301 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa
 237      6361 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc
 238      6421 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat
 239      6481 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg
 240      6541 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc
 241      6601 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag
 242      6661 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag
 243      6721 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa
 244      6781 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt
 245      6841 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga
 246      6901 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac
 247      6961 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa
 248      7021 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga
 249      7081 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt
 250      7141 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga
 251      7201 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc
 252      7261 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag
 253      7321 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt
 254      7381 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt
 255      7441 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca
 256      7501 ag
 257 //
 258