test/jalview/io/testProps.jvprops

   1 #---JalviewX Properties File---
   2 #Fri Apr 25 09:54:25 BST 2014
   3 #
   4 BACKUPFILES_ENABLED=true
   5 BACKUPFILES_PRESET=0
   6 BACKUPFILES_SAVED=_BACKUPFILESTESTTMP%n\t8\tfalse\tfalse\t2\tfalse
   7 BACKUPFILES_CUSTOM=_BACKUPFILESTESTTMP%n\t8\tfalse\tfalse\t2\tfalse
   8 SCREEN_Y=768
   9 SCREEN_X=936
  10 SHOW_WSDISCOVERY_ERRORS=true
  11 LATEST_VERSION=2.8.0b1
  12 SHOW_CONSERVATION=true
  13 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
  14 JAVA_CONSOLE_SCREEN_WIDTH=450
  15 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  16 ID_ITALICS=true
  17 SORT_ALIGNMENT=No sort
  18 SHOW_IDENTITY=true
  19 WSMENU_BYHOST=false
  20 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  21 SHOW_FULLSCREEN=false
  22 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  23 FONT_NAME=SansSerif
  24 BLC_JVSUFFIX=true
  25 VERSION_CHECK=false
  26 YEAR=2011
  27 SHOW_DBREFS_TOOLTIP=true
  28 MSF_JVSUFFIX=true
  29 SCREENGEOMETRY_HEIGHT=1600
  30 JAVA_CONSOLE_SCREEN_Y=475
  31 JAVA_CONSOLE_SCREEN_X=830
  32 PFAM_JVSUFFIX=true
  33 PIR_JVSUFFIX=true
  34 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
  35 JAVA_CONSOLE_SCREEN_HEIGHT=162
  36 PIR_MODELLER=false
  37 GAP_SYMBOL=-
  38 SHOW_QUALITY=true
  39 SHOW_OCCUPANCY=true
  40 SHOW_GROUP_CONSERVATION=false
  41 SHOW_JWS2_SERVICES=true
  42 SHOW_NPFEATS_TOOLTIP=true
  43 FONT_STYLE=plain
  44 ANTI_ALIAS=false
  45 SORT_BY_TREE=false
  46 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
  47 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
  48 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
  49 SHOW_GROUP_CONSENSUS=false
  50 SHOW_CONSENSUS_HISTOGRAM=true
  51 SHOW_OVERVIEW=false
  52 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  53 FIGURE_AUTOIDWIDTH=false
  54 SCREEN_WIDTH=900
  55 ANNOTATIONCOLOUR_MIN=ffc800
  56 SHOW_STARTUP_FILE=false
  57 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  58 DEFAULT_FILE_FORMAT=FASTA
  59 SHOW_JAVA_CONSOLE=false
  60 VERSION=2.8b1
  61 FIGURE_USERIDWIDTH=
  62 WSMENU_BYTYPE=false
  63 DEFAULT_COLOUR=None
  64 NOQUESTIONNAIRES=true
  65 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
  66 BUILD_DATE=01 November 2013
  67 PILEUP_JVSUFFIX=true
  68 SHOW_CONSENSUS_LOGO=false
  69 SCREENGEOMETRY_WIDTH=2560
  70 SHOW_ANNOTATIONS=true
  71 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  72 USAGESTATS=false
  73 JALVIEW_RSS_WINDOW_SCREEN_X=0
  74 SHOW_UNCONSERVED=false
  75 SHOW_JVSUFFIX=true
  76 DAS_LOCAL_SOURCE=
  77 SCREEN_HEIGHT=650
  78 ANNOTATIONCOLOUR_MAX=ff0000
  79 AUTO_CALC_CONSENSUS=true
  80 FASTA_JVSUFFIX=true
  81 DAS_ACTIVE_SOURCE=uniprot\t
  82 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  83 PAD_GAPS=false
  84 CLUSTAL_JVSUFFIX=true
  85 SHOW_ENFIN_SERVICES=true
  86 FONT_SIZE=10
  87 RIGHT_ALIGN_IDS=false
  88 USE_PROXY=false
  89 WRAP_ALIGNMENT=false
  90 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
  91 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
  92 logs.Jalview.level=DEBUG