test/jalview/io/testProps_singlefilebackup.jvprops

   1 #---JalviewX Properties File---
   2 #Mon Dec 14 16:32:45 GMT 2020
   3 BACKUPFILES_CUSTOM=_BACKUPFILESTESTTMP%n\t6\tfalse\tfalse\t2\tfalse
   4 BACKUPFILES_ENABLED=true
   5 BACKUPFILES_PRESET=2
   6 BACKUPFILES_SAVED=~\t1\tfalse\tfalse\t1\tfalse
   7 ADD_SS_ANN=false
   8 ADD_TEMPFACT_ANN=false
   9 ANNOTATIONCOLOUR_MAX=ff0000
  10 ANNOTATIONCOLOUR_MIN=ffc800
  11 ANTI_ALIAS=false
  12 AUTHORFNAMES=Jim Procter, Mungo Carstairs, Ben Soares, Kira Mourao, Tochukwu 'Charles' Ofoegbu, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Anne Menard, Daniel Barton, Natasha Sherstnev, David Roldan-Martinez, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
  13 AUTHORS=J Procter, M Carstairs, B Soares, K Mourao, TC Ofoegbu, AM Waterhouse, J Engelhardt, LM Lui, A Menard, D Barton, N Sherstnev, D Roldan-Martinez, M Clamp, S Searle, G Barton
  14 AUTO_CALC_CONSENSUS=true
  15 BLC_JVSUFFIX=true
  16 BUILD_DATE=20\:10\:14 10 December 2020
  17 CLUSTAL_JVSUFFIX=true
  18 DAS_ACTIVE_SOURCE=uniprot\t
  19 DAS_LOCAL_SOURCE=
  20 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
  21 DEFAULT_COLOUR=None
  22 DEFAULT_COLOUR_NUC=None
  23 DEFAULT_COLOUR_PROT=None
  24 DEFAULT_FILE_FORMAT=FASTA
  25 DEFAULT_URL=EMBL-EBI Search
  26 EPS_RENDERING=Prompt each time
  27 EXPORT_EMBBED_BIOJSON=true
  28 FASTA_JVSUFFIX=true
  29 FIGURE_AUTOIDWIDTH=false
  30 FIGURE_FIXEDIDWIDTH=
  31 FIGURE_USERIDWIDTH=
  32 FONT_NAME=SansSerif
  33 FONT_SIZE=10
  34 FONT_STYLE=plain
  35 GAP_COLOUR=c0c0c0
  36 GAP_SYMBOL=-
  37 HIDDEN_COLOUR=2c2c2c
  38 HTML_RENDERING=Prompt each time
  39 ID_ITALICS=true
  40 INSTALLATION=Source git-commit\:225f7f621b [develop]
  41 JALVIEW_NEWS_RSS_LASTMODIFIED=29 Oct 2020, 21\:44\:11
  42 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=301
  43 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
  44 JALVIEW_RSS_WINDOW_SCREEN_X=0
  45 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  46 JAVA_CONSOLE_SCREEN_HEIGHT=250
  47 JAVA_CONSOLE_SCREEN_WIDTH=337
  48 JAVA_CONSOLE_SCREEN_X=622
  49 JAVA_CONSOLE_SCREEN_Y=320
  50 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  51 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  52 logs.Jalview.level=DEBUG
  53 MAP_WITH_SIFTS=false
  54 MSF_JVSUFFIX=true
  55 NOQUESTIONNAIRES=true
  56 PAD_GAPS=false
  57 PFAM_JVSUFFIX=true
  58 PILEUP_JVSUFFIX=true
  59 PIR_JVSUFFIX=true
  60 PIR_MODELLER=false
  61 PROXY_AUTH=false
  62 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  63 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  64 RIGHT_ALIGN_IDS=false
  65 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='Fasta',writeasfile$
  66 SCALE_PROTEIN_TO_CDNA=false
  67 SCREENGEOMETRY_HEIGHT=1080
  68 SCREENGEOMETRY_WIDTH=1920
  69 SCREEN_HEIGHT=1018
  70 SCREEN_WIDTH=1920
  71 SCREEN_X=0
  72 SCREEN_Y=0
  73 SEQUENCE_LINKS=EMBL-EBI Search|https\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  74 SHOW_ANNOTATIONS=true
  75 SHOW_AUTOCALC_ABOVE=true
  76 SHOW_CONSENSUS_HISTOGRAM=true
  77 SHOW_CONSENSUS_LOGO=false
  78 SHOW_CONSERVATION=true
  79 SHOW_DBREFS_TOOLTIP=true
  80 SHOW_ENFIN_SERVICES=true
  81 SHOW_FULLSCREEN=false
  82 SHOW_GROUP_CONSENSUS=false
  83 SHOW_GROUP_CONSERVATION=false
  84 SHOW_IDENTITY=true
  85 SHOW_JAVA_CONSOLE=false
  86 SHOW_JVSUFFIX=true
  87 SHOW_JWS2_SERVICES=true
  88 SHOW_NPFEATS_TOOLTIP=true
  89 SHOW_OCCUPANCY=true
  90 SHOW_OVERVIEW=false
  91 SHOW_OV_HIDDEN_AT_START=false
  92 SHOW_QUALITY=true
  93 SHOW_STARTUP_FILE=false
  94 SHOW_UNCONSERVED=false
  95 SHOW_WSDISCOVERY_ERRORS=true
  96 SORT_ALIGNMENT=No sort
  97 SORT_ANNOTATIONS=NONE
  98 SORT_BY_TREE=false
  99 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
 100 STRUCT_FROM_PDB=false
 101 STRUCTURE_DISPLAY=JMOL
 102 SVG_RENDERING=Prompt each time
 103 USAGESTATS=false
 104 USE_LEGACY_GAP=false
 105 USE_PROXY=false
 106 USE_RNAVIEW=false
 107 VERSION=2.11.2.0-develop
 108 VERSION_CHECK=false
 109 WRAP_ALIGNMENT=false
 110 WSMENU_BYHOST=false
 111 WSMENU_BYTYPE=false
 112 YEAR=2018