JAL-2909 update tests for stranded insert map and writeback of mapped read extent...
[jalview.git] / utils / checkstyle / import-control.xml
1 <?xml version="1.0" encoding="UTF-8"?>
2
3 <!DOCTYPE import-control PUBLIC
4     "-//Puppy Crawl//DTD Import Control 1.1//EN"
5     "http://www.puppycrawl.com/dtds/import_control_1_1.dtd">
6     
7     <!--
8         see http://checkstyle.sourceforge.net/config_imports.html#ImportControl
9         allow/disallow rules propagate to sub-packages 
10         unless local-only="true" is specified
11         
12         note this can handle only one top-level package, so ImportControl is
13         suppressed for MCview and vamsas in checkstyle-suppress.xml
14         (all rules are suppressed for com/ext/org/uk)
15     -->
16    <import-control pkg="jalview">
17    
18                 <allow pkg="java"/>
19                 <allow pkg="jalview"/>
20                 <allow pkg="com.stevesoft.pat"/>
21                 
22                 <subpackage name="appletgui">
23                 <disallow pkg="javax.swing"/>
24                 <disallow pkg="jalview.gui"/>
25                 <disallow pkg="jalview.ws"/>
26                 <allow pkg="org.jmol"/>
27                 <allow pkg="javajs.awt" class="jalview.appletgui.AppletJmolBinding"/>
28             </subpackage>
29                 
30                 <subpackage name="bin">
31                 <allow pkg="groovy"/>
32                 <allow pkg="org.apache.log4j" class="jalview.bin.Cache"/>
33                 <allow pkg="javax.swing" class="jalview.bin.Jalview"/>
34                 <allow pkg="netscape.javascript" class="jalview.bin.JalviewLite"/>
35             </subpackage>
36                 
37                 <subpackage name="datamodel">
38                 <disallow pkg="jalview.gui"/>
39                 <allow pkg="fr.orsay.lri.varna"/>
40                 <allow pkg="htsjdk"/>
41                         <subpackage name="xdb.embl">
42                         <allow pkg="org.exolab.castor"/>
43                     </subpackage>
44             </subpackage>
45                 
46                 <subpackage name="ext">
47                         <subpackage name="ensembl">
48                         <allow pkg="javax.ws"/>
49                         <allow pkg="org.json"/>
50                         </subpackage>
51                         <subpackage name="htsjdk">
52                         <allow pkg="htsjdk"/>
53                         </subpackage>
54                         <subpackage name="jmol">
55                         <allow pkg="MCview"/>
56                         <allow pkg="org.jmol"/>
57                         </subpackage>
58                         <subpackage name="paradise">
59                         <allow pkg="org.apache"/>
60                         <allow pkg="org.json"/>
61                         </subpackage>
62                         <subpackage name="rbvi">
63                         <allow pkg="ext.edu.ucsf"/>
64                         <allow pkg="javax.servlet"/>
65                         </subpackage>
66                         <subpackage name="so">
67                         <allow pkg="org.biojava"/>
68                         </subpackage>
69                         <subpackage name="varna">
70                         <allow pkg="fr.orsay"/>
71                         </subpackage>
72             </subpackage>
73                 
74                 <subpackage name="fts">
75                 <allow pkg="javax.swing"/>
76                 <allow pkg="javax.ws"/>
77                 <allow pkg="org.json"/>
78                 <allow pkg="com.sun.jersey"/>
79             </subpackage>
80                 
81                 <subpackage name="gui">
82                 <allow pkg="javax.swing"/>
83                 <allow pkg="javax.help"/>
84                 <allow pkg="javax.imageio"/>
85                 <allow pkg="ext.edu.ucsf"/>
86                 <allow pkg="net.miginfocom"/>
87                 <allow pkg="org.jibble"/>
88                 <allow pkg="org.jmol"/>
89                 <allow pkg="org.openscience"/>
90                 <allow pkg="org.exolab.castor" class="jalview.gui.Jalview2XML"/>
91                 <allow pkg="org.robsite" class="jalview.gui.BlogReader"/>
92                 <allow pkg="org.apache.log4j" class="jalview.gui.Console"/>
93                 <allow pkg="org.apache.log4j" class="jalview.gui.JalviewAppender"/>
94                 <allow pkg="org.biodas" class="jalview.gui.DasSourceBrowser"/>
95                 <allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
96                 <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
97                 <allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
98                 <allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
99             </subpackage>
100                 
101                 <subpackage name="jbgui">
102                 <allow pkg="javax.swing"/>
103                 <allow pkg="net.miginfocom"/>
104             </subpackage>
105
106                 <subpackage name="httpserver">
107                 <allow pkg="javax.servlet"/>
108                 <allow pkg="org.eclipse.jetty"/>
109             </subpackage>
110
111                 <subpackage name="io">
112                 <allow pkg="javax.swing"/>
113                 <allow pkg="org.jfree"/>
114                 <allow pkg="org.json"/>
115                 <allow pkg="org.jsoup"/>
116                 <allow pkg="uk.ac.ebi"/>
117                 <allow pkg="uk.ac.vamsas"/>
118                 <allow pkg="fr.orsay.lri.varna"/>
119                 <allow pkg="MCview"/>
120                 <allow pkg="htsjdk.samtools"/>
121                 </subpackage>       
122                                 
123                 <subpackage name="javascript">
124                 <allow pkg="netscape.javascript"/>
125             </subpackage>
126
127                 <subpackage name="rest">
128                 <allow pkg="javax.servlet"/>
129                 </subpackage>
130
131                 <subpackage name="schemes">
132                         <allow pkg="org.exolab.castor" class="jalview.schemes.ColourSchemeLoader"/>
133                 </subpackage>
134
135                 <subpackage name="structure">
136                 <allow pkg="MCview"/>
137                 </subpackage>
138                 
139                 <subpackage name="urls">
140                         <allow pkg="javax.swing" class="jalview.urls.UrlLinkTableModel"/>
141                         <allow pkg="org.json"/>
142                 </subpackage>
143
144                 <subpackage name="util">
145                 <allow pkg="javax.swing"/>
146                 <allow pkg="javax.imageio"/>
147                 <allow pkg="org.jfree"/>
148                 <allow pkg="org.jibble"/>
149                 </subpackage>
150
151                 <subpackage name="ws">
152                 <allow pkg="javax.swing"/>
153                 <allow pkg="javax.xml"/>
154                 <allow pkg="ext.vamsas"/>
155                 <allow pkg="compbio"/>
156                 <allow pkg="MCview"/>
157                 <allow pkg="org.apache.http"/>
158                 <allow pkg="org.apache.james"/>
159                 <allow pkg="org.apache.axis"/>
160                 <allow pkg="org.biodas.jdas"/>
161                 <allow pkg="org.exolab.castor"/>
162                 <allow pkg="uk.ac.ebi"/>
163                 <allow pkg="vamsas.objects"/>
164                 </subpackage>
165
166    </import-control>