3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
4 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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35 This page generated: <strong>June 8 2004</strong></td></tr></tbody></table><table border="0" width="100%" cellspacing="0" cellpadding="5"><tr><td><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">Appendix F. GNU Free Documentation License Version 1.1, March 2000</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="license-gnu.html">Prev</a> </td><th width="60%" align="center"> </th><td width="20%" align="right"> <a accesskey="n" href="license-common-public.html">Next</a></td></tr></table><hr></div><div class="appendix" lang="en"><div class="titlepage"><div><div><h2 class="title"><a name="license-gnu-doc"></a>Appendix F. GNU Free Documentation License Version 1.1, March 2000</h2></div></div><div></div></div><a class="indexterm" name="d0e7403"></a><a class="indexterm" name="d0e7406"></a><p>
36 Copyright (C) 2000 Free Software Foundation, Inc.
37 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
39 Everyone is permitted to copy and distribute verbatim copies
40 of this license document, but changing it is not allowed.
44 The purpose of this License is to make a manual, textbook, or other
45 written document "free" in the sense of freedom: to assure everyone
46 the effective freedom to copy and redistribute it, with or without
47 modifying it, either commercially or noncommercially. Secondarily,
48 this License preserves for the author and publisher a way to get
49 credit for their work, while not being considered responsible for
50 modifications made by others.
52 This License is a kind of "copyleft", which means that derivative
53 works of the document must themselves be free in the same sense. It
54 complements the GNU General Public License, which is a copyleft
55 license designed for free software.
57 We have designed this License in order to use it for manuals for free
58 software, because free software needs free documentation: a free
59 program should come with manuals providing the same freedoms that the
60 software does. But this License is not limited to software manuals;
61 it can be used for any textual work, regardless of subject matter or
62 whether it is published as a printed book. We recommend this License
63 principally for works whose purpose is instruction or reference.
65 1. APPLICABILITY AND DEFINITIONS
67 This License applies to any manual or other work that contains a
68 notice placed by the copyright holder saying it can be distributed
69 under the terms of this License. The "Document", below, refers to any
70 such manual or work. Any member of the public is a licensee, and is
73 A "Modified Version" of the Document means any work containing the
74 Document or a portion of it, either copied verbatim, or with
75 modifications and/or translated into another language.
77 A "Secondary Section" is a named appendix or a front-matter section of
78 the Document that deals exclusively with the relationship of the
79 publishers or authors of the Document to the Document's overall subject
80 (or to related matters) and contains nothing that could fall directly
81 within that overall subject. (For example, if the Document is in part a
82 textbook of mathematics, a Secondary Section may not explain any
83 mathematics.) The relationship could be a matter of historical
84 connection with the subject or with related matters, or of legal,
85 commercial, philosophical, ethical or political position regarding
88 The "Invariant Sections" are certain Secondary Sections whose titles
89 are designated, as being those of Invariant Sections, in the notice
90 that says that the Document is released under this License.
92 The "Cover Texts" are certain short passages of text that are listed,
93 as Front-Cover Texts or Back-Cover Texts, in the notice that says that
94 the Document is released under this License.
96 A "Transparent" copy of the Document means a machine-readable copy,
97 represented in a format whose specification is available to the
98 general public, whose contents can be viewed and edited directly and
99 straightforwardly with generic text editors or (for images composed of
100 pixels) generic paint programs or (for drawings) some widely available
101 drawing editor, and that is suitable for input to text formatters or
102 for automatic translation to a variety of formats suitable for input
103 to text formatters. A copy made in an otherwise Transparent file
104 format whose markup has been designed to thwart or discourage
105 subsequent modification by readers is not Transparent. A copy that is
106 not "Transparent" is called "Opaque".
108 Examples of suitable formats for Transparent copies include plain
109 ASCII without markup, Texinfo input format, LaTeX input format, SGML
110 or XML using a publicly available DTD, and standard-conforming simple
111 HTML designed for human modification. Opaque formats include
112 PostScript, PDF, proprietary formats that can be read and edited only
113 by proprietary word processors, SGML or XML for which the DTD and/or
114 processing tools are not generally available, and the
115 machine-generated HTML produced by some word processors for output
118 The "Title Page" means, for a printed book, the title page itself,
119 plus such following pages as are needed to hold, legibly, the material
120 this License requires to appear in the title page. For works in
121 formats which do not have any title page as such, "Title Page" means
122 the text near the most prominent appearance of the work's title,
123 preceding the beginning of the body of the text.
127 You may copy and distribute the Document in any medium, either
128 commercially or noncommercially, provided that this License, the
129 copyright notices, and the license notice saying this License applies
130 to the Document are reproduced in all copies, and that you add no other
131 conditions whatsoever to those of this License. You may not use
132 technical measures to obstruct or control the reading or further
133 copying of the copies you make or distribute. However, you may accept
134 compensation in exchange for copies. If you distribute a large enough
135 number of copies you must also follow the conditions in section 3.
137 You may also lend copies, under the same conditions stated above, and
138 you may publicly display copies.
140 3. COPYING IN QUANTITY
142 If you publish printed copies of the Document numbering more than 100,
143 and the Document's license notice requires Cover Texts, you must enclose
144 the copies in covers that carry, clearly and legibly, all these Cover
145 Texts: Front-Cover Texts on the front cover, and Back-Cover Texts on
146 the back cover. Both covers must also clearly and legibly identify
147 you as the publisher of these copies. The front cover must present
148 the full title with all words of the title equally prominent and
149 visible. You may add other material on the covers in addition.
150 Copying with changes limited to the covers, as long as they preserve
151 the title of the Document and satisfy these conditions, can be treated
152 as verbatim copying in other respects.
154 If the required texts for either cover are too voluminous to fit
155 legibly, you should put the first ones listed (as many as fit
156 reasonably) on the actual cover, and continue the rest onto adjacent
159 If you publish or distribute Opaque copies of the Document numbering
160 more than 100, you must either include a machine-readable Transparent
161 copy along with each Opaque copy, or state in or with each Opaque copy
162 a publicly-accessible computer-network location containing a complete
163 Transparent copy of the Document, free of added material, which the
164 general network-using public has access to download anonymously at no
165 charge using public-standard network protocols. If you use the latter
166 option, you must take reasonably prudent steps, when you begin
167 distribution of Opaque copies in quantity, to ensure that this
168 Transparent copy will remain thus accessible at the stated location
169 until at least one year after the last time you distribute an Opaque
170 copy (directly or through your agents or retailers) of that edition to
173 It is requested, but not required, that you contact the authors of the
174 Document well before redistributing any large number of copies, to give
175 them a chance to provide you with an updated version of the Document.
179 You may copy and distribute a Modified Version of the Document under
180 the conditions of sections 2 and 3 above, provided that you release
181 the Modified Version under precisely this License, with the Modified
182 Version filling the role of the Document, thus licensing distribution
183 and modification of the Modified Version to whoever possesses a copy
184 of it. In addition, you must do these things in the Modified Version:
185 </p><div class="orderedlist"><ol type="A"><li><p>
186 Use in the Title Page (and on the covers, if any) a title distinct
187 from that of the Document, and from those of previous versions
188 (which should, if there were any, be listed in the History section
189 of the Document). You may use the same title as a previous version
190 if the original publisher of that version gives permission.
192 List on the Title Page, as authors, one or more persons or entities
193 responsible for authorship of the modifications in the Modified
194 Version, together with at least five of the principal authors of the
195 Document (all of its principal authors, if it has less than five).
197 State on the Title page the name of the publisher of the
198 Modified Version, as the publisher.
200 Preserve all the copyright notices of the Document.
202 Add an appropriate copyright notice for your modifications
203 adjacent to the other copyright notices.
205 Include, immediately after the copyright notices, a license notice
206 giving the public permission to use the Modified Version under the
207 terms of this License, in the form shown in the Addendum below.
209 Preserve in that license notice the full lists of Invariant Sections
210 and required Cover Texts given in the Document's license notice.
212 Include an unaltered copy of this License.
214 Preserve the section entitled "History", and its title, and add to
215 it an item stating at least the title, year, new authors, and
216 publisher of the Modified Version as given on the Title Page. If
217 there is no section entitled "History" in the Document, create one
218 stating the title, year, authors, and publisher of the Document as
219 given on its Title Page, then add an item describing the Modified
220 Version as stated in the previous sentence.
222 Preserve the network location, if any, given in the Document for
223 public access to a Transparent copy of the Document, and likewise
224 the network locations given in the Document for previous versions
225 it was based on. These may be placed in the "History" section.
226 You may omit a network location for a work that was published at
227 least four years before the Document itself, or if the original
228 publisher of the version it refers to gives permission.
230 In any section entitled "Acknowledgements" or "Dedications",
231 preserve the section's title, and preserve in the section all the
232 substance and tone of each of the contributor acknowledgements
233 and/or dedications given therein.
235 Preserve all the Invariant Sections of the Document,
236 unaltered in their text and in their titles. Section numbers
237 or the equivalent are not considered part of the section titles.
239 Delete any section entitled "Endorsements". Such a section
240 may not be included in the Modified Version.
242 Do not retitle any existing section as "Endorsements"
243 or to conflict in title with any Invariant Section.
244 </p></li></ol></div><p>
245 If the Modified Version includes new front-matter sections or
246 appendices that qualify as Secondary Sections and contain no material
247 copied from the Document, you may at your option designate some or all
248 of these sections as invariant. To do this, add their titles to the
249 list of Invariant Sections in the Modified Version's license notice.
250 These titles must be distinct from any other section titles.
252 You may add a section entitled "Endorsements", provided it contains
253 nothing but endorsements of your Modified Version by various
254 parties--for example, statements of peer review or that the text has
255 been approved by an organization as the authoritative definition of a
258 You may add a passage of up to five words as a Front-Cover Text, and a
259 passage of up to 25 words as a Back-Cover Text, to the end of the list
260 of Cover Texts in the Modified Version. Only one passage of
261 Front-Cover Text and one of Back-Cover Text may be added by (or
262 through arrangements made by) any one entity. If the Document already
263 includes a cover text for the same cover, previously added by you or
264 by arrangement made by the same entity you are acting on behalf of,
265 you may not add another; but you may replace the old one, on explicit
266 permission from the previous publisher that added the old one.
268 The author(s) and publisher(s) of the Document do not by this License
269 give permission to use their names for publicity for or to assert or
270 imply endorsement of any Modified Version.
272 5. COMBINING DOCUMENTS
274 You may combine the Document with other documents released under this
275 License, under the terms defined in section 4 above for modified
276 versions, provided that you include in the combination all of the
277 Invariant Sections of all of the original documents, unmodified, and
278 list them all as Invariant Sections of your combined work in its
281 The combined work need only contain one copy of this License, and
282 multiple identical Invariant Sections may be replaced with a single
283 copy. If there are multiple Invariant Sections with the same name but
284 different contents, make the title of each such section unique by
285 adding at the end of it, in parentheses, the name of the original
286 author or publisher of that section if known, or else a unique number.
287 Make the same adjustment to the section titles in the list of
288 Invariant Sections in the license notice of the combined work.
290 In the combination, you must combine any sections entitled "History"
291 in the various original documents, forming one section entitled
292 "History"; likewise combine any sections entitled "Acknowledgements",
293 and any sections entitled "Dedications". You must delete all sections
294 entitled "Endorsements."
296 6. COLLECTIONS OF DOCUMENTS
298 You may make a collection consisting of the Document and other documents
299 released under this License, and replace the individual copies of this
300 License in the various documents with a single copy that is included in
301 the collection, provided that you follow the rules of this License for
302 verbatim copying of each of the documents in all other respects.
304 You may extract a single document from such a collection, and distribute
305 it individually under this License, provided you insert a copy of this
306 License into the extracted document, and follow this License in all
307 other respects regarding verbatim copying of that document.
309 7. AGGREGATION WITH INDEPENDENT WORKS
311 A compilation of the Document or its derivatives with other separate
312 and independent documents or works, in or on a volume of a storage or
313 distribution medium, does not as a whole count as a Modified Version
314 of the Document, provided no compilation copyright is claimed for the
315 compilation. Such a compilation is called an "aggregate", and this
316 License does not apply to the other self-contained works thus compiled
317 with the Document, on account of their being thus compiled, if they
318 are not themselves derivative works of the Document.
320 If the Cover Text requirement of section 3 is applicable to these
321 copies of the Document, then if the Document is less than one quarter
322 of the entire aggregate, the Document's Cover Texts may be placed on
323 covers that surround only the Document within the aggregate.
324 Otherwise they must appear on covers around the whole aggregate.
328 Translation is considered a kind of modification, so you may
329 distribute translations of the Document under the terms of section 4.
330 Replacing Invariant Sections with translations requires special
331 permission from their copyright holders, but you may include
332 translations of some or all Invariant Sections in addition to the
333 original versions of these Invariant Sections. You may include a
334 translation of this License provided that you also include the
335 original English version of this License. In case of a disagreement
336 between the translation and the original English version of this
337 License, the original English version will prevail.
341 You may not copy, modify, sublicense, or distribute the Document except
342 as expressly provided for under this License. Any other attempt to
343 copy, modify, sublicense or distribute the Document is void, and will
344 automatically terminate your rights under this License. However,
345 parties who have received copies, or rights, from you under this
346 License will not have their licenses terminated so long as such
347 parties remain in full compliance.
349 10. FUTURE REVISIONS OF THIS LICENSE
351 The Free Software Foundation may publish new, revised versions
352 of the GNU Free Documentation License from time to time. Such new
353 versions will be similar in spirit to the present version, but may
354 differ in detail to address new problems or concerns. See
355 <a href="http://www.gnu.org/copyleft/" target="_top">http://www.gnu.org/copyleft</a>.
357 Each version of the License is given a distinguishing version number.
358 If the Document specifies that a particular numbered version of this
359 License "or any later version" applies to it, you have the option of
360 following the terms and conditions either of that specified version or
361 of any later version that has been published (not as a draft) by the
362 Free Software Foundation. If the Document does not specify a version
363 number of this License, you may choose any version ever published (not
364 as a draft) by the Free Software Foundation.
366 ADDENDUM: How to use this License for your documents
368 To use this License in a document you have written, include a copy of
369 the License in the document and put the following copyright and
370 license notices just after the title page:
371 </p><div class="blockquote"><blockquote class="blockquote"><p>
372 Copyright (c) YEAR YOUR NAME.
373 Permission is granted to copy, distribute and/or modify this document
374 under the terms of the GNU Free Documentation License, Version 1.1
375 or any later version published by the Free Software Foundation;
376 with the Invariant Sections being LIST THEIR TITLES, with the
377 Front-Cover Texts being LIST, and with the Back-Cover Texts being LIST.
378 A copy of the license is included in the section entitled "GNU
379 Free Documentation License".
380 </p></blockquote></div><p>
381 If you have no Invariant Sections, write "with no Invariant Sections"
382 instead of saying which ones are invariant. If you have no
383 Front-Cover Texts, write "no Front-Cover Texts" instead of
384 "Front-Cover Texts being LIST"; likewise for Back-Cover Texts.
386 If your document contains nontrivial examples of program code, we
387 recommend releasing these examples in parallel under your choice of
388 free software license, such as the GNU General Public License,
389 to permit their use in free software.
390 </p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="license-gnu.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="manual.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="license-common-public.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">Appendix E. GNU GENERAL PUBLIC LICENSE Version 2, June 1991 </td><td width="20%" align="center"><a accesskey="h" href="manual.html">Home</a></td><td width="40%" align="right" valign="top"> Appendix G. Common Public License Version 1.0</td></tr></table></div></td></tr></table></td></tr><tr><td bgcolor="#eeeecc" height="17" style="font-size:9px;padding-left:5px"><a href="#toppage">to top</a></td></tr><tr><td height="30"><br></td></tr><tr><td height="3"></td></tr><tr><td bgcolor="#336699" height="1"></td></tr><tr><td height="1"></td></tr><tr><td bgcolor="#336699" height="16"></td></tr><tr><td bgcolor="#ff9966" height="4"></td></tr><tr><td class="footer" align="center" height="15" valign="middle">
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