</head>
<body>
<p>
- <strong>Jalview 2.11 - major and minor new features</strong>
+ Welcome to Jalview Version $$Version-Rel$$ !!<br />Please take a
+ look at the <a href="releases.html#$$Version-Rel$$">release
+ notes</a> for this build.
+ </p>
+ <p>
+ <strong>Jalview 2.11.1.4</strong>
+ </p>
+ <p>Jalview 2.11.1.4 is the fourth patch release in the 2.11.1
+ series. One critical bug was fixed in this release - when Jalview
+ would occasionally hang when viewing structures in Jmol. This release
+ also introduces a number of new configuration options for disabling
+ web service connections used by the Jalview Debian package.
</p>
- <p>Jalview 2.11 introduces support for loading VCF files, and new
- filters and shading models for sequence features. Under the hood,
- we've addressed many bugs, and also made some important changes in
- the way the Jalview desktop is installed and launched.</p>
- <ul>
- <li><em>VCF Support</em>. Proteins and genomic contigs with
- chromosomal location annotation (such as protein coding genes
- retrieved from Ensembl) can be annotated with variants imported
- from a local VCF file.</li>
- <li><em>The Jalview Launcher and Update System</em><br />
- Jalview's new installation model means you'll only need to
- download and install Jalview once. After installation, Jalview
- will automatically keep itself up to date. The launcher also sets
- Jalview's memory automatically, so you'll never again have to
- manually configure Java's memory settings.<br />We are grateful to
- Install4J who provided us with a free license for their
- installation system, and Jalview's over the air update system is
- via Getdown.</li>
- </ul>
<p>
- The full list of bugs fixed in this release can be found in the <a
- href="releases.html#Jalview.2.11.0">2.11 Release Notes</a>.
+ For the full release notes, see <a
+ href="releases.html#Jalview.2.11.1.4">the Jalview 2.11.1.4
+ release notes</a>.
</p>
<p>
- <strong>Jalview and Java 11, 13, and onwards</strong>
+ <strong>Known Issues</strong>
</p>
- <p>Java 11 provides improved performance and better OS
- integration, so we now recommend users select our Java 11 Jalview
- distribution rather than the legacy Java 8 build.</p>
- <em>Known Issues - update for 211 </em>
- <ul>
- <li>OSX: The 'Open File' dialog for Jalview's Groovy Console
- appears with the title 'Save As', and attempting to select a file
- to load yields a FileNotFound exception.</br>The workaround is to first
- clear the 'Untitled' filename before selecting the file you wish
- to load.
- </li>
- <li>OSX: Links don't open when clicked on or via the Sequence
- or Alignment window popup menu.</li>
- <li>OSX (Webstart): Jalview only displays old news feed items</li>
+ <p>New known issues in this release affect recovery of CDS/Protein
+ relationships from project files, and interactive selection of
+ protein sequences from a tree built on linked nucleotide sequences.
+ We will provide patches for these issues as soon as possible.</p>
</ul>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff