JAL-1620 version bump and release notes

[jalview.git] / src / jalview / api / AlignmentViewPanel.java

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 7b3d3cd..ef894cd 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,18 +1,59 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
 
 import jalview.datamodel.AlignmentI;
+import jalview.structure.StructureSelectionManager;
 
 /**
  * abstract interface implemented by alignment panels holding an alignment view
+ * 
  * @author JimP
- *
+ * 
  */
-public interface AlignmentViewPanel
+public interface AlignmentViewPanel extends OOMHandlerI
 {
 
   AlignmentI getAlignment();
 
+  StructureSelectionManager getStructureSelectionManager();
+
+  /**
+   * repaint the alignment view after a datamodel update.
+   * 
+   * @param updateOverview
+   *          - if true, the overview panel will also be updated and repainted
+   */
+
+  void paintAlignment(boolean updateOverview);
+
+  /**
+   * automatically adjust annotation panel height for new annotation whilst
+   * ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
+
+  /**
+   * 
+   * @return displayed name for the view
+   */
+  String getViewName();
 }