JAL-1620 version bump and release notes

[jalview.git] / src / jalview / binding / JGroup.java

diff --git a/src/jalview/binding/JGroup.java b/src/jalview/binding/JGroup.java
old mode 100755 (executable)
new mode 100644 (file)
index 2109516..241459d
--- a/src/jalview/binding/JGroup.java
+++ b/src/jalview/binding/JGroup.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
@@ -21,6 +24,8 @@ package jalview.binding;
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -342,8 +347,11 @@ public class JGroup implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._seqList.size())
     {
-      throw new IndexOutOfBoundsException("getSeq: Index value '" + index
-              + "' not in range [0.." + (this._seqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getSeq",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._seqList.size() - 1)).toString()
+        })); 
     }
 
     return ((java.lang.Integer) _seqList.get(index)).intValue();
@@ -701,8 +709,11 @@ public class JGroup implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._seqList.size())
     {
-      throw new IndexOutOfBoundsException("setSeq: Index value '" + index
-              + "' not in range [0.." + (this._seqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setSeq",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._seqList.size() - 1)).toString()
+          })); 
     }
 
     this._seqList.set(index, new java.lang.Integer(vSeq));