JAL-1620 version bump and release notes

[jalview.git] / src / jalview / datamodel / SecondaryStructureAnnotation.java

diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index 5c3eae9..1edc175 100644 (file)
--- a/src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -1,31 +1,52 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.datamodel;
 
 import fr.orsay.lri.varna.models.rna.RNA;
 
 public class SecondaryStructureAnnotation extends AlignmentAnnotation
 {
-       
 
-       private static RNA _rna = null;
-         public SecondaryStructureAnnotation (RNA rna) 
-         {
-                super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
-                
-           
-           _rna = rna;
-         }
-       
-         public RNA getRNA()
-        {
-                 return _rna;
-        }
-         public static Annotation[] getAnnotation(RNA rna) 
-         {
-                 Annotation[] ann =  new Annotation[rna.getSize()];
-                        for(int i=0;i<ann.length;i++)
-                        {      
-                                ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);; 
-                        }
-                 return ann;
-         }
+  private static RNA _rna = null;
+
+  public SecondaryStructureAnnotation(RNA rna)
+  {
+    super("Secondary Structure", "Un truc trop cool", getAnnotation(rna));
+
+    _rna = rna;
+  }
+
+  public RNA getRNA()
+  {
+    return _rna;
+  }
+
+  public static Annotation[] getAnnotation(RNA rna)
+  {
+    Annotation[] ann = new Annotation[rna.getSize()];
+    for (int i = 0; i < ann.length; i++)
+    {
+      ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);
+      ;
+    }
+    return ann;
+  }
 }