JAL-3438 spotless for 2.11.2.0

[jalview.git] / src / jalview / fts / service / uniprot / UniprotFTSPanel.java

diff --git a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
index 748088d..33ad8c4 100644 (file)
--- a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
+++ b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
@@ -26,6 +26,8 @@ import jalview.fts.api.FTSRestClientI;
 import jalview.fts.core.FTSRestRequest;
 import jalview.fts.core.FTSRestResponse;
 import jalview.fts.core.GFTSPanel;
+import jalview.gui.Help;
+import jalview.gui.Help.HelpId;
 import jalview.gui.SequenceFetcher;
 import jalview.util.MessageManager;
 
@@ -33,6 +35,8 @@ import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Map;
 
+import javax.help.HelpSetException;
+
 @SuppressWarnings("serial")
 public class UniprotFTSPanel extends GFTSPanel
 {
@@ -44,14 +48,22 @@ public class UniprotFTSPanel extends GFTSPanel
 
   private static final String UNIPROT_FTS_CACHE_KEY = "CACHE.UNIPROT_FTS";
 
-  public UniprotFTSPanel(SequenceFetcher seqFetcher)
+  private static final String UNIPROT_AUTOSEARCH = "FTS.UNIPROT.AUTOSEARCH";
+
+  /**
+   * Constructor given an (optional) sequence fetcher panel to revert to on
+   * clicking the 'Back' button
+   * 
+   * @param fetcher
+   */
+  public UniprotFTSPanel(SequenceFetcher fetcher)
   {
-    super();
+    super(fetcher);
     pageLimit = UniProtFTSRestClient.getInstance()
             .getDefaultResponsePageSize();
-    this.seqFetcher = seqFetcher;
-    this.progressIndicator = (seqFetcher == null) ? null
-            : seqFetcher.getProgressIndicator();
+    this.seqFetcher = fetcher;
+    this.progressIndicator = (fetcher == null) ? null
+            : fetcher.getProgressIndicator();
   }
 
   @Override
@@ -85,15 +97,14 @@ public class UniprotFTSPanel extends GFTSPanel
           request.setSearchTerm(searchTerm);
           request.setOffSet(offSet);
           request.setWantedFields(wantedFields);
-          FTSRestClientI uniProtRestCleint = UniProtFTSRestClient
+          FTSRestClientI uniProtRestClient = UniProtFTSRestClient
                   .getInstance();
           FTSRestResponse resultList;
           try
           {
-            resultList = uniProtRestCleint.executeRequest(request);
+            resultList = uniProtRestClient.executeRequest(request);
           } catch (Exception e)
           {
-            e.printStackTrace();
             setErrorMessage(e.getMessage());
             checkForErrors();
             setSearchInProgress(false);
@@ -119,16 +130,18 @@ public class UniprotFTSPanel extends GFTSPanel
                   : MessageManager.getString("label.result");
           if (isPaginationEnabled() && resultSetCount > 0)
           {
-            updateSearchFrameTitle(defaultFTSFrameTitle + " - " + result
-                    + " "
-                    + totalNumberformatter.format((Number) (offSet + 1))
-                    + " to "
-                    + totalNumberformatter
-                            .format((Number) (offSet + resultSetCount))
-                    + " of "
-                    + totalNumberformatter
-                            .format((Number) totalResultSetCount)
-                    + " " + " (" + (endTime - startTime) + " milli secs)");
+            updateSearchFrameTitle(
+                    defaultFTSFrameTitle + " - " + result + " "
+                            + totalNumberformatter
+                                    .format(Integer.valueOf(offSet + 1))
+                            + " to "
+                            + totalNumberformatter.format(Integer
+                                    .valueOf(offSet + resultSetCount))
+                            + " of "
+                            + totalNumberformatter.format(
+                                    Integer.valueOf(totalResultSetCount))
+                            + " " + " (" + (endTime - startTime)
+                            + " milli secs)");
           }
           else
           {
@@ -208,8 +221,7 @@ public class UniprotFTSPanel extends GFTSPanel
     }
 
     String ids = selectedIds.toString();
-    // System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
-    seqFetcher.getTextArea().setText(ids);
+    seqFetcher.setQuery(ids);
     Thread worker = new Thread(seqFetcher);
     worker.start();
     delayAndEnableActionButtons();
@@ -238,4 +250,22 @@ public class UniprotFTSPanel extends GFTSPanel
   {
     return UNIPROT_FTS_CACHE_KEY;
   }
+
+  @Override
+  public String getAutosearchPreference()
+  {
+    return UNIPROT_AUTOSEARCH;
+  }
+
+  @Override
+  protected void showHelp()
+  {
+    try
+    {
+      Help.showHelpWindow(HelpId.UniprotFts);
+    } catch (HelpSetException e1)
+    {
+      e1.printStackTrace();
+    }
+  }
 }