JAL-1681 show cDNA consensus on protein alignment - first version

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index e7a4735..2f43e82 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4796,8 +4796,9 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
             boolean asSplitFrame = true;
             if (asSplitFrame)
             {
-              AlignFrame copyThis = new AlignFrame(
-                      AlignFrame.this.viewport.getAlignment(),
+              final Alignment copyAlignment = new Alignment(
+                      AlignFrame.this.viewport.getAlignment());
+              AlignFrame copyThis = new AlignFrame(copyAlignment,
                       AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
               copyThis.setTitle(AlignFrame.this.getTitle());
               // SplitFrame with dna above, protein below