JAL-3438 spotless for 2.11.2.0

[jalview.git] / src / jalview / gui / AnnotationColumnChooser.java

diff --git a/src/jalview/gui/AnnotationColumnChooser.java b/src/jalview/gui/AnnotationColumnChooser.java
index 6924b63..c0d4708 100644 (file)
--- a/src/jalview/gui/AnnotationColumnChooser.java
+++ b/src/jalview/gui/AnnotationColumnChooser.java
@@ -21,10 +21,12 @@
 
 package jalview.gui;
 
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.HiddenColumns;
 import jalview.io.cache.JvCacheableInputBox;
 import jalview.schemes.AnnotationColourGradient;
 import jalview.util.MessageManager;
+import jalview.util.Platform;
 import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
 
 import java.awt.BorderLayout;
@@ -33,6 +35,8 @@ import java.awt.Color;
 import java.awt.Dimension;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
+import java.awt.event.FocusAdapter;
+import java.awt.event.FocusEvent;
 import java.awt.event.ItemEvent;
 import java.awt.event.ItemListener;
 import java.awt.event.KeyEvent;
@@ -86,9 +90,9 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
 
   private HiddenColumns oldHiddenColumns;
 
-  protected int MIN_WIDTH = 420;
+  protected static int MIN_WIDTH = (Platform.isJS() ? 370 : 420);
 
-  protected int MIN_HEIGHT = 430;
+  protected static int MIN_HEIGHT = (Platform.isJS() ? 370 : 430);
 
   public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
   {
@@ -97,8 +101,9 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     frame.setContentPane(this);
     frame.setLayer(JLayeredPane.PALETTE_LAYER);
     Desktop.addInternalFrame(frame,
-            MessageManager.getString("label.select_by_annotation"), 520,
-            215);
+            MessageManager.getString("label.select_by_annotation"), 0, 0);
+    // BH note: MIGLayout ignores this completely,
+    // possibly creating a frame smaller than specified:
     frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
 
     addSliderChangeListener();
@@ -202,7 +207,6 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
             AnnotationColumnChooser.NO_GRAPH_VIEW);
     switchableViewsPanel.add(graphFilterView,
             AnnotationColumnChooser.GRAPH_VIEW);
-
     this.setLayout(new BorderLayout());
     this.add(annotationComboBoxPanel, java.awt.BorderLayout.PAGE_START);
     this.add(switchableViewsPanel, java.awt.BorderLayout.CENTER);
@@ -252,7 +256,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
   {
     if (slider.isEnabled())
     {
-      getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
+      getCurrentAnnotation().threshold.value = getSliderValue();
       updateView();
       propagateSeqAssociatedThreshold(updateAllAnnotation,
               getCurrentAnnotation());
@@ -282,6 +286,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     thresholdValue.setEnabled(true);
     percentThreshold.setEnabled(true);
 
+    final AlignmentAnnotation currentAnnotation = getCurrentAnnotation();
     if (selectedThresholdItem == AnnotationColourGradient.NO_THRESHOLD)
     {
       slider.setEnabled(false);
@@ -292,26 +297,21 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     }
     else if (selectedThresholdItem != AnnotationColourGradient.NO_THRESHOLD)
     {
-      if (getCurrentAnnotation().threshold == null)
+      if (currentAnnotation.threshold == null)
       {
-        getCurrentAnnotation().setThreshold(new jalview.datamodel.GraphLine(
-                (getCurrentAnnotation().graphMax
-                        - getCurrentAnnotation().graphMin) / 2f,
+        currentAnnotation.setThreshold(new jalview.datamodel.GraphLine(
+                (currentAnnotation.graphMax - currentAnnotation.graphMin)
+                        / 2f,
                 "Threshold", Color.black));
       }
 
       adjusting = true;
-      float range = getCurrentAnnotation().graphMax * 1000
-              - getCurrentAnnotation().graphMin * 1000;
 
-      slider.setMinimum((int) (getCurrentAnnotation().graphMin * 1000));
-      slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
-      slider.setValue(
-              (int) (getCurrentAnnotation().threshold.value * 1000));
+      setSliderModel(currentAnnotation.graphMin, currentAnnotation.graphMax,
+              currentAnnotation.threshold.value);
 
       setThresholdValueText();
 
-      slider.setMajorTickSpacing((int) (range / 10f));
       slider.setEnabled(true);
       thresholdValue.setEnabled(true);
       adjusting = false;
@@ -319,10 +319,9 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       // build filter params
       filterParams.setThresholdType(
               AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
-      if (getCurrentAnnotation().isQuantitative())
+      if (currentAnnotation.isQuantitative())
       {
-        filterParams
-                .setThresholdValue(getCurrentAnnotation().threshold.value);
+        filterParams.setThresholdValue(currentAnnotation.threshold.value);
 
         if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
         {
@@ -377,8 +376,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     // filterAnnotations, because showing hidden columns has the side effect of
     // adding them to the selection
     av.showAllHiddenColumns();
-    av.getColumnSelection().filterAnnotations(
-            getCurrentAnnotation().annotations, filterParams);
+    av.getColumnSelection().filterAnnotations(currentAnnotation.annotations,
+            filterParams);
 
     boolean hideCols = getActionOption() == ACTION_OPTION_HIDE;
     if (hideCols)
@@ -718,7 +717,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     private static final String FILTER_BY_ANN_CACHE_KEY = "CACHE.SELECT_FILTER_BY_ANNOT";
 
     public JvCacheableInputBox<String> searchBox = new JvCacheableInputBox<>(
-            FILTER_BY_ANN_CACHE_KEY);
+            FILTER_BY_ANN_CACHE_KEY, 23);
 
     public SearchPanel(AnnotationColumnChooser aColChooser)
     {
@@ -728,22 +727,28 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       this.setBorder(new TitledBorder(
               MessageManager.getString("label.search_filter")));
 
-      searchBox.setPrototypeDisplayValue("XXXXXXXXXXXXXXXXXXXXXXX");
-      searchBox.setToolTipText(
+      searchBox.getComponent().setToolTipText(
               MessageManager.getString("info.enter_search_text_here"));
-      searchBox.getEditor().getEditorComponent()
-              .addKeyListener(new java.awt.event.KeyAdapter()
-              {
-                @Override
-                public void keyPressed(KeyEvent e)
-                {
-                  if (e.getKeyCode() == KeyEvent.VK_ENTER)
-                  {
-                    e.consume();
-                    searchStringAction();
-                  }
-                }
-              });
+      searchBox.addKeyListener(new java.awt.event.KeyAdapter()
+      {
+        @Override
+        public void keyPressed(KeyEvent e)
+        {
+          if (e.getKeyCode() == KeyEvent.VK_ENTER)
+          {
+            e.consume();
+            searchStringAction();
+          }
+        }
+      });
+      searchBox.addFocusListener(new FocusAdapter()
+      {
+        @Override
+        public void focusLost(FocusEvent e)
+        {
+          searchStringAction();
+        }
+      });
 
       JvSwingUtils.jvInitComponent(displayName, "label.label");
       displayName.addActionListener(new ActionListener()
@@ -761,12 +766,12 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
         @Override
         public void actionPerformed(ActionEvent actionEvent)
         {
-          discriptionCheckboxAction();
+          descriptionCheckboxAction();
         }
       });
 
       syncState();
-      this.add(searchBox);
+      this.add(searchBox.getComponent());
       this.add(displayName);
       this.add(description);
     }
@@ -777,7 +782,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       aColChooser.updateView();
     }
 
-    public void discriptionCheckboxAction()
+    public void descriptionCheckboxAction()
     {
       aColChooser.setCurrentSearchPanel(this);
       aColChooser.updateView();