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JAL-1620 version bump and release notes
[jalview.git] / src / jalview / gui / AnnotationLabels.java
diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 0c29840..9c1db3d 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -47,6 +47,7 @@ import java.awt.event.MouseListener;
 import java.awt.event.MouseMotionListener;
 import java.awt.geom.AffineTransform;
 import java.awt.image.BufferedImage;
+import java.util.Arrays;
 import java.util.Vector;
 import java.util.regex.Pattern;
 
@@ -477,29 +478,39 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         {
           desc.append("<br/>");
         }
-
+        // if (aa.hasProperties())
+        // {
+        // desc.append("<table>");
+        // for (String prop : aa.getProperties())
+        // {
+        // desc.append("<tr><td>" + prop + "</td><td>"
+        // + aa.getProperty(prop) + "</td><tr>");
+        // }
+        // desc.append("</table>");
+        // }
       }
       else
       {
         // begin the tooltip's html fragment
         desc.append("<html>");
+        if (aa.hasScore())
+        {
+          // TODO: limit precision of score to avoid noise from imprecise
+          // doubles
+          // (64.7 becomes 64.7+/some tiny value).
+          desc.append(" Score: " + aa.score);
+        }
       }
-      if (aa.hasScore())
-      {
-        // TODO: limit precision of score to avoid noise from imprecise doubles
-        // (64.7 becomes 64.7+/some tiny value).
-        desc.append(" Score: " + aa.score);
-      }
-
       if (desc.length() > 6)
       {
         desc.append("</html>");
         this.setToolTipText(desc.toString());
       }
       else
+      {
         this.setToolTipText(null);
+      }
     }
-
   }
 
   /**
@@ -672,7 +683,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         pop.addSeparator();
         // av and sequencegroup need to implement same interface for
         final JCheckBoxMenuItem cbmi = new JCheckBoxMenuItem(
-                "Ignore Gaps In Consensus",
+                       MessageManager.getString("label.ignore_gaps_consensus"),
                 (aa[selectedRow].groupRef != null) ? aa[selectedRow].groupRef
                         .getIgnoreGapsConsensus() : ap.av
                         .getIgnoreGapsConsensus());
@@ -698,7 +709,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         if (aaa.groupRef != null)
         {
           final JCheckBoxMenuItem chist = new JCheckBoxMenuItem(
-                  "Show Group Histogram",
+                         MessageManager.getString("label.show_group_histogram"),
                   aa[selectedRow].groupRef.isShowConsensusHistogram());
           chist.addActionListener(new ActionListener()
           {
@@ -717,7 +728,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           });
           pop.add(chist);
           final JCheckBoxMenuItem cprofl = new JCheckBoxMenuItem(
-                  "Show Group Logo",
+                         MessageManager.getString("label.show_group_logo"),
                   aa[selectedRow].groupRef.isShowSequenceLogo());
           cprofl.addActionListener(new ActionListener()
           {
@@ -736,7 +747,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           });
           pop.add(cprofl);
           final JCheckBoxMenuItem cproflnorm = new JCheckBoxMenuItem(
-                  "Normalise Group Logo",
+                         MessageManager.getString("label.normalise_group_logo"),
                   aa[selectedRow].groupRef.isNormaliseSequenceLogo());
           cproflnorm.addActionListener(new ActionListener()
           {
@@ -761,7 +772,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         else
         {
           final JCheckBoxMenuItem chist = new JCheckBoxMenuItem(
-                  "Show Histogram", av.isShowConsensusHistogram());
+                         MessageManager.getString("label.show_histogram"), av.isShowConsensusHistogram());
           chist.addActionListener(new ActionListener()
           {
             public void actionPerformed(ActionEvent e)
@@ -780,7 +791,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           });
           pop.add(chist);
           final JCheckBoxMenuItem cprof = new JCheckBoxMenuItem(
-                  "Show Logo", av.isShowSequenceLogo());
+                         MessageManager.getString("label.show_logo"), av.isShowSequenceLogo());
           cprof.addActionListener(new ActionListener()
           {
             public void actionPerformed(ActionEvent e)
@@ -799,7 +810,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           });
           pop.add(cprof);
           final JCheckBoxMenuItem cprofnorm = new JCheckBoxMenuItem(
-                  "Normalise Logo", av.isNormaliseSequenceLogo());
+                         MessageManager.getString("label.normalise_logo"), av.isNormaliseSequenceLogo());
           cprofnorm.addActionListener(new ActionListener()
           {
             public void actionPerformed(ActionEvent e)
@@ -1028,7 +1039,9 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           offset -= fm.getDescent();
         }
         else
+        {
           offset += fm.getDescent();
+        }
 
         x = width - fm.stringWidth(aa[i].label) - 3;