JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / gui / AppVarna.java

diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java
index 99bcff4..3742864 100644 (file)
--- a/src/jalview/gui/AppVarna.java
+++ b/src/jalview/gui/AppVarna.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -64,8 +64,8 @@ public class AppVarna extends JInternalFrame implements SelectionListener,
         SecondaryStructureListener, InterfaceVARNASelectionListener,
         VamsasSource
 {
-  private static final byte[] PAIRS = new byte[]
-  { '(', ')', '[', ']', '{', '}', '<', '>' };
+  private static final byte[] PAIRS = new byte[] { '(', ')', '[', ']', '{',
+      '}', '<', '>' };
 
   private AppVarnaBinding vab;
 
@@ -181,8 +181,7 @@ public class AppVarna extends JInternalFrame implements SelectionListener,
     String theTitle = sname
             + (aa.sequenceRef == null ? " trimmed to " + seq.getName() : "");
     theTitle = MessageManager.formatMessage("label.varna_params",
-            new String[]
-            { theTitle });
+            new String[] { theTitle });
     setTitle(theTitle);
 
     String gappedTitle = sname + " (with gaps)";
@@ -195,7 +194,6 @@ public class AppVarna extends JInternalFrame implements SelectionListener,
     vab.setSelectedIndex(0);
   }
 
-
   /**
    * Constructor that links the viewer to a parent panel (but has no structures
    * yet - use addModel to add them)
@@ -677,7 +675,6 @@ public class AppVarna extends JInternalFrame implements SelectionListener,
     vab.setSelectedIndex(selectedIndex);
   }
 
-
   /**
    * Add a model with associated Varna session file
    * 
@@ -716,7 +713,6 @@ public class AppVarna extends JInternalFrame implements SelectionListener,
     }
   }
 
-
   /**
    * Replace everything except RNA secondary structure characters with a period
    *