JAL-3438 spotless for 2.11.2.0
[jalview.git] / src / jalview / gui / JDatabaseTree.java
index c6b16b1..327eade 100644 (file)
@@ -1,11 +1,32 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.gui;
 
-import jalview.bin.Cache;
+import java.util.Locale;
+
+import jalview.util.MessageManager;
 import jalview.ws.seqfetcher.DbSourceProxy;
 
 import java.awt.BorderLayout;
 import java.awt.Component;
-import java.awt.Container;
 import java.awt.Dimension;
 import java.awt.FlowLayout;
 import java.awt.GridLayout;
@@ -13,6 +34,8 @@ import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.awt.event.KeyEvent;
 import java.awt.event.KeyListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
 import java.util.ArrayList;
 import java.util.HashSet;
 import java.util.Hashtable;
@@ -20,11 +43,11 @@ import java.util.List;
 import java.util.Vector;
 
 import javax.swing.JButton;
-import javax.swing.JFrame;
 import javax.swing.JLabel;
 import javax.swing.JPanel;
 import javax.swing.JScrollPane;
 import javax.swing.JTree;
+import javax.swing.ToolTipManager;
 import javax.swing.event.TreeSelectionEvent;
 import javax.swing.event.TreeSelectionListener;
 import javax.swing.tree.DefaultMutableTreeNode;
@@ -39,16 +62,19 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
 {
   boolean allowMultiSelections = false;
 
+  public int action;
+
   JButton getDatabaseSelectorButton()
   {
-    final JButton viewdbs = new JButton("--- Select Database ---");
+    final JButton viewdbs = new JButton(
+            MessageManager.getString("action.select_ddbb"));
     viewdbs.addActionListener(new ActionListener()
     {
 
       @Override
       public void actionPerformed(ActionEvent arg0)
       {
-        showDialog(null);
+        showDialog();
       }
     });
     return viewdbs;
@@ -62,20 +88,23 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
 
   private JLabel dbstatus, dbstatex;
 
+  private JPanel mainPanel = new JPanel(new BorderLayout());
+
   public JDatabaseTree(jalview.ws.SequenceFetcher sfetch)
   {
-    initDialogFrame(this, true, false, "Select Database Retrieval Source",
-            650, 490);
+    mainPanel.add(this);
+    initDialogFrame(mainPanel, true, false, MessageManager
+            .getString("label.select_database_retrieval_source"), 650, 490);
     /*
      * Dynamically generated database list will need a translation function from
      * internal source to externally distinct names. UNIPROT and UP_NAME are
      * identical DB sources, and should be collapsed.
      */
     DefaultMutableTreeNode tn = null, root = new DefaultMutableTreeNode();
-    Hashtable<String, DefaultMutableTreeNode> source = new Hashtable<String, DefaultMutableTreeNode>();
+    Hashtable<String, DefaultMutableTreeNode> source = new Hashtable<>();
     sfetcher = sfetch;
     String dbs[] = sfetch.getSupportedDb();
-    Hashtable<String,String> ht = new Hashtable<String,String>();
+    Hashtable<String, String> ht = new Hashtable<>();
     for (int i = 0; i < dbs.length; i++)
     {
       tn = source.get(dbs[i]);
@@ -120,19 +149,19 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     }
     // and sort the tree
     sortTreeNodes(root);
-    svp = new JScrollPane();
-    // svp.setAutoscrolls(true);
     dbviews = new JTree(new DefaultTreeModel(root, false));
     dbviews.setCellRenderer(new DbTreeRenderer(this));
 
-    dbviews.getSelectionModel().setSelectionMode(
-            TreeSelectionModel.SINGLE_TREE_SELECTION);
-    svp.getViewport().setView(dbviews);
-    // svp.getViewport().setMinimumSize(new Dimension(300,200));
-    // svp.setSize(300,250);
-    // JPanel panel=new JPanel();
-    // panel.setSize(new Dimension(350,220));
-    // panel.add(svp);
+    dbviews.getSelectionModel()
+            .setSelectionMode(TreeSelectionModel.SINGLE_TREE_SELECTION);
+    svp = new JScrollPane(dbviews);
+    svp.setMinimumSize(new Dimension(100, 200));
+    svp.setPreferredSize(new Dimension(200, 400));
+    svp.setMaximumSize(new Dimension(300, 600));
+
+    JPanel panel = new JPanel(new BorderLayout());
+    panel.setSize(new Dimension(350, 220));
+    panel.add(svp);
     dbviews.addTreeSelectionListener(new TreeSelectionListener()
     {
 
@@ -142,8 +171,21 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
         _setSelectionState();
       }
     });
-    JPanel jc = new JPanel(new BorderLayout()), j = new JPanel(
-            new FlowLayout());
+    dbviews.addMouseListener(new MouseAdapter()
+    {
+
+      @Override
+      public void mousePressed(MouseEvent e)
+      {
+        if (e.getClickCount() == 2)
+        {
+          okPressed();
+          closeDialog();
+        }
+      }
+    });
+    JPanel jc = new JPanel(new BorderLayout()),
+            j = new JPanel(new FlowLayout());
     jc.add(svp, BorderLayout.CENTER);
 
     java.awt.Font f;
@@ -159,8 +201,8 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     dbstat.add(dbstatex);
     jc.add(dbstat, BorderLayout.SOUTH);
     jc.validate();
-    // j.setPreferredSize(new Dimension(300,50));
     add(jc, BorderLayout.CENTER);
+    ok.setEnabled(false);
     j.add(ok);
     j.add(cancel);
     add(j, BorderLayout.SOUTH);
@@ -170,46 +212,55 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
 
   private void sortTreeNodes(DefaultMutableTreeNode root)
   {
-    if (root.getChildCount()==0)
+    if (root.getChildCount() == 0)
     {
       return;
     }
-    int count=root.getChildCount();
-    String[] names=new String[count];
-    DefaultMutableTreeNode[] nodes=new DefaultMutableTreeNode[count];
-    for (int i=0;i<count;i++)
+    int count = root.getChildCount();
+    String[] names = new String[count];
+    DefaultMutableTreeNode[] nodes = new DefaultMutableTreeNode[count];
+    for (int i = 0; i < count; i++)
     {
       TreeNode node = root.getChildAt(i);
       if (node instanceof DefaultMutableTreeNode)
       {
-        DefaultMutableTreeNode child=(DefaultMutableTreeNode) node;
-        nodes[i]=child;
-        if (child.getUserObject() instanceof DbSourceProxy) {
-          names[i]=((DbSourceProxy)child.getUserObject()).getDbName().toLowerCase();
-        } else {
-          names[i] = ((String) child.getUserObject()).toLowerCase();
+        DefaultMutableTreeNode child = (DefaultMutableTreeNode) node;
+        nodes[i] = child;
+        if (child.getUserObject() instanceof DbSourceProxy)
+        {
+          names[i] = ((DbSourceProxy) child.getUserObject()).getDbName()
+                  .toLowerCase(Locale.ROOT);
+        }
+        else
+        {
+          names[i] = ((String) child.getUserObject())
+                  .toLowerCase(Locale.ROOT);
           sortTreeNodes(child);
         }
-      } else {
-        throw new Error("Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.");
+      }
+      else
+      {
+        throw new Error(MessageManager
+                .getString("error.implementation_error_cant_reorder_tree"));
       }
     }
-    jalview.util.QuickSort.sort(names,  nodes);
+    jalview.util.QuickSort.sort(names, nodes);
     root.removeAllChildren();
-    for (int i=count-1;i>=0;i--)
+    for (int i = count - 1; i >= 0; i--)
     {
       root.add(nodes[i]);
     }
   }
 
-  private class DbTreeRenderer extends DefaultTreeCellRenderer implements
-          TreeCellRenderer
+  private class DbTreeRenderer extends DefaultTreeCellRenderer
+          implements TreeCellRenderer
   {
     JDatabaseTree us;
 
     public DbTreeRenderer(JDatabaseTree me)
     {
       us = me;
+      ToolTipManager.sharedInstance().registerComponent(dbviews);
     }
 
     private Component returnLabel(String txt)
@@ -231,19 +282,23 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
         value = vl.getUserObject();
         if (value instanceof DbSourceProxy)
         {
-          val = (((DbSourceProxy) value).getDbName());
+          val = ((DbSourceProxy) value).getDbName();
+          if (((DbSourceProxy) value).getDescription() != null)
+          { // getName()
+            this.setToolTipText(((DbSourceProxy) value).getDescription());
+          }
         }
         else
         {
           if (value instanceof String)
           {
-            val = ((String) value);
+            val = (String) value;
           }
         }
       }
       if (value == null)
       {
-        val = ("");
+        val = "";
       }
       return super.getTreeCellRendererComponent(tree, val, selected,
               expanded, leaf, row, hasFocus);
@@ -268,7 +323,6 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
   protected void okPressed()
   {
     _setSelectionState();
-    closeDialog();
   }
 
   @Override
@@ -280,7 +334,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     closeDialog();
   }
 
-  private void showDialog(Container parent)
+  void showDialog()
   {
     oldselection = selection;
     oldtsel = tsel;
@@ -309,21 +363,27 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     {
       return;
     }
+    ok.setEnabled(false);
     if (dbviews.getSelectionCount() == 0)
     {
       selection = null;
     }
+
     tsel = dbviews.getSelectionPaths();
     boolean forcedFirstChild = false;
-    List<DbSourceProxy> srcs = new ArrayList<DbSourceProxy>();
+    List<DbSourceProxy> srcs = new ArrayList<>();
     if (tsel != null)
     {
       for (TreePath tp : tsel)
       {
-        DefaultMutableTreeNode admt, dmt = (DefaultMutableTreeNode) tp
-                .getLastPathComponent();
+        DefaultMutableTreeNode admt,
+                dmt = (DefaultMutableTreeNode) tp.getLastPathComponent();
         if (dmt.getUserObject() != null)
         {
+          /*
+           * enable OK button once a selection has been made
+           */
+          ok.setEnabled(true);
           if (dmt.getUserObject() instanceof DbSourceProxy)
           {
             srcs.add((DbSourceProxy) dmt.getUserObject());
@@ -332,26 +392,14 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
           {
             if (allowMultiSelections)
             {
-              srcs.addAll(sfetcher.getSourceProxy((String) dmt
-                      .getUserObject()));
+              srcs.addAll(sfetcher
+                      .getSourceProxy((String) dmt.getUserObject()));
             }
             else
             {
-              if ((admt = dmt.getFirstLeaf()) != null
-                      && admt.getUserObject() != null)
-              {
-                // modify db selection to just first leaf.
-                if (admt.getUserObject() instanceof DbSourceProxy)
-                {
-                  srcs.add((DbSourceProxy) admt.getUserObject());
-                }
-                else
-                {
-                  srcs.add(sfetcher.getSourceProxy(
-                          (String) admt.getUserObject()).get(0));
-                }
-                forcedFirstChild = true;
-              }
+              srcs.add(sfetcher.getSourceProxy((String) dmt.getUserObject())
+                      .get(0));
+              forcedFirstChild = true;
             }
           }
         }
@@ -391,29 +439,30 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       }
     }
 
+    dbstatex.setText(" ");
     if (allowMultiSelections)
     {
-      dbstatus.setText("Selected "
-              + srcs.size()
-              + " database"
-              + (srcs.size() == 1 ? "" : "s")
-              + " to fetch from"
-              + (srcs.size() > 0 ? " with " + x + " test quer"
-                      + (x == 1 ? "y" : "ies") : "."));
-      dbstatex.setText(" ");
+      dbstatus.setText(MessageManager.formatMessage(
+              "label.selected_database_to_fetch_from", new String[]
+              { Integer.valueOf(srcs.size()).toString(),
+                  (srcs.size() == 1 ? "" : "s"),
+                  (srcs.size() > 0
+                          ? " with " + x + " test quer"
+                                  + (x == 1 ? "y" : "ies")
+                          : ".") }));
     }
     else
     {
       if (nm.length() > 0)
       {
-        dbstatus.setText("Database: " + nm);
+        dbstatus.setText(MessageManager
+                .formatMessage("label.database_param", new String[]
+                { nm }));
         if (qr.length() > 0)
         {
-          dbstatex.setText("Example: " + qr);
-        }
-        else
-        {
-          dbstatex.setText(" ");
+          dbstatex.setText(MessageManager
+                  .formatMessage("label.example_param", new String[]
+                  { qr }));
         }
       }
       else
@@ -441,7 +490,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
       return null;
     }
     StringBuffer sb = new StringBuffer();
-    HashSet<String> hs = new HashSet<String>();
+    HashSet<String> hs = new HashSet<>();
     for (DbSourceProxy dbs : getSelectedSources())
     {
       String tq = dbs.getTestQuery();
@@ -458,7 +507,7 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     return sb.toString();
   }
 
-  List<ActionListener> lstners = new Vector<ActionListener>();
+  List<ActionListener> lstners = new Vector<>();
 
   public void addActionListener(ActionListener actionListener)
   {
@@ -470,64 +519,18 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     lstners.remove(actionListener);
   }
 
-  public static void main(String args[])
-  {
-    Cache.getDasSourceRegistry();
-    JDatabaseTree jdt = new JDatabaseTree(new jalview.ws.SequenceFetcher());
-    JFrame foo = new JFrame();
-    foo.setLayout(new BorderLayout());
-    foo.add(jdt.getDatabaseSelectorButton(), BorderLayout.CENTER);
-    foo.pack();
-    foo.setVisible(true);
-    int nultimes = 5;
-    final Thread us = Thread.currentThread();
-    jdt.addActionListener(new ActionListener()
-    {
-
-      @Override
-      public void actionPerformed(ActionEvent e)
-      {
-        us.interrupt();
-      }
-    });
-    do
-    {
-      try
-      {
-        Thread.sleep(50);
-      } catch (InterruptedException x)
-      {
-        nultimes--;
-        if (!jdt.hasSelection())
-        {
-          System.out.println("No Selection");
-        }
-        else
-        {
-          System.out.println("Selection: " + jdt.getSelectedItem());
-          int s = 1;
-          for (DbSourceProxy pr : jdt.getSelectedSources())
-          {
-            System.out.println("Source " + s++ + ": " + pr.getDbName()
-                    + " (" + pr.getDbSource() + ") Version "
-                    + pr.getDbVersion() + ". Test:\t" + pr.getTestQuery());
-          }
-          System.out.println("Test queries: " + jdt.getExampleQueries());
-        }
-      }
-    } while (nultimes > 0 && foo.isVisible());
-    foo.setVisible(false);
-  }
-
   @Override
   public void keyPressed(KeyEvent arg0)
   {
     if (!arg0.isConsumed() && arg0.getKeyCode() == KeyEvent.VK_ENTER)
     {
+      action = arg0.getKeyCode();
       okPressed();
+      closeDialog();
     }
     if (!arg0.isConsumed() && arg0.getKeyChar() == KeyEvent.VK_ESCAPE)
     {
+      action = arg0.getKeyCode();
       cancelPressed();
     }
   }
@@ -545,4 +548,11 @@ public class JDatabaseTree extends JalviewDialog implements KeyListener
     // TODO Auto-generated method stub
 
   }
+
+  @Override
+  public void setVisible(boolean arg0)
+  {
+    System.out.println("setVisible: " + arg0);
+    super.setVisible(arg0);
+  }
 }