/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
import java.awt.*;
import java.awt.event.*;
+
import javax.swing.*;
import jalview.datamodel.*;
+import jalview.util.MessageManager;
/**
* DOCUMENT ME!
- *
+ *
* @author $author$
* @version $Revision$
*/
-public class ScalePanel
- extends JPanel implements MouseMotionListener, MouseListener
+public class ScalePanel extends JPanel implements MouseMotionListener,
+ MouseListener
{
protected int offy = 4;
/** DOCUMENT ME!! */
public int width;
+
protected AlignViewport av;
+
AlignmentPanel ap;
+
boolean stretchingGroup = false;
- int min; //used by mouseDragged to see if user
- int max; //used by mouseDragged to see if user
+
+ int min; // used by mouseDragged to see if user
+
+ int max; // used by mouseDragged to see if user
+
boolean mouseDragging = false;
// wants to delete columns
/**
* DOCUMENT ME!
- *
- * @param evt DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
*/
public void mousePressed(MouseEvent evt)
{
int x = (evt.getX() / av.getCharWidth()) + av.getStartRes();
final int res;
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
+ {
+ x = av.getColumnSelection().adjustForHiddenColumns(x);
+ }
+
+ if (x >= av.getAlignment().getWidth())
{
- res = av.getColumnSelection().adjustForHiddenColumns(x);
+ res = av.getAlignment().getWidth() - 1;
}
else
{
JPopupMenu pop = new JPopupMenu();
if (reveal != null)
{
- JMenuItem item = new JMenuItem("Reveal");
+ JMenuItem item = new JMenuItem(MessageManager.getString("label.reveal"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
if (av.getColumnSelection().getHiddenColumns().size() > 1)
{
- item = new JMenuItem("Reveal All");
+ item = new JMenuItem(MessageManager.getString("action.reveal_all"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
}
else if (av.getColumnSelection().contains(res))
{
- JMenuItem item = new JMenuItem("Hide Columns");
+ JMenuItem item = new JMenuItem(MessageManager.getString("label.hide_columns"));
item.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
{
av.hideColumns(res, res);
if (av.getSelectionGroup() != null
- && av.getSelectionGroup().getSize() == av.alignment.getHeight())
+ && av.getSelectionGroup().getSize() == av
+ .getAlignment().getHeight())
{
av.setSelectionGroup(null);
}
pop.show(this, evt.getX(), evt.getY());
}
}
- else // LEFT MOUSE TO SELECT
+ else
+ // LEFT MOUSE TO SELECT
{
if (!evt.isControlDown() && !evt.isShiftDown())
{
av.getColumnSelection().addElement(res);
SequenceGroup sg = new SequenceGroup();
// try to be as quick as possible
- SequenceI[] iVec = av.alignment.getSequencesArray();
+ SequenceI[] iVec = av.getAlignment().getSequencesArray();
for (int i = 0; i < iVec.length; i++)
{
sg.addSequence(iVec[i], false);
iVec[i] = null;
}
- iVec=null;
+ iVec = null;
sg.setStartRes(res);
sg.setEndRes(res);
- av.setSelectionGroup(sg);
if (evt.isShiftDown())
{
sg.setStartRes(min);
sg.setEndRes(max);
}
-
+ av.setSelectionGroup(sg);
}
ap.paintAlignment(false);
+ av.sendSelection();
}
/**
* DOCUMENT ME!
- *
- * @param evt DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
*/
public void mouseReleased(MouseEvent evt)
{
int res = (evt.getX() / av.getCharWidth()) + av.getStartRes();
- if (res > av.alignment.getWidth())
+ if (av.hasHiddenColumns())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getColumnSelection().adjustForHiddenColumns(res);
}
- if (av.hasHiddenColumns)
+ if (res >= av.getAlignment().getWidth())
{
- res = av.getColumnSelection().adjustForHiddenColumns(res);
+ res = av.getAlignment().getWidth() - 1;
}
if (!stretchingGroup)
}
stretchingGroup = false;
ap.paintAlignment(false);
+ av.sendSelection();
}
/**
* DOCUMENT ME!
- *
- * @param evt DOCUMENT ME!
+ *
+ * @param evt
+ * DOCUMENT ME!
*/
public void mouseDragged(MouseEvent evt)
{
res = 0;
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
res = av.getColumnSelection().adjustForHiddenColumns(res);
}
- if (res > av.alignment.getWidth())
+ if (res >= av.getAlignment().getWidth())
{
- res = av.alignment.getWidth() - 1;
+ res = av.getAlignment().getWidth() - 1;
}
if (res < min)
int col;
for (int i = min; i <= max; i++)
{
- col = av.getColumnSelection().adjustForHiddenColumns(i);
+ col = i; // av.getColumnSelection().adjustForHiddenColumns(i);
- if ( (col < sg.getStartRes()) || (col > sg.getEndRes()))
+ if ((col < sg.getStartRes()) || (col > sg.getEndRes()))
{
av.getColumnSelection().removeElement(col);
}
}
public void mouseClicked(MouseEvent evt)
- {}
+ {
+ }
public void mouseMoved(MouseEvent evt)
{
- if (!av.hasHiddenColumns)
+ if (!av.hasHiddenColumns())
{
return;
}
reveal = null;
for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size(); i++)
{
- int[] region = (int[]) av.getColumnSelection().getHiddenColumns().
- elementAt(i);
+ int[] region = (int[]) av.getColumnSelection().getHiddenColumns()
+ .elementAt(i);
if (res + 1 == region[0] || res - 1 == region[1])
{
reveal = region;
ToolTipManager.sharedInstance().registerComponent(this);
- this.setToolTipText("Reveal Hidden Columns with Right Mouse Button");
+ this.setToolTipText(MessageManager.getString("label.reveal_hidden_columns"));
break;
}
else
/**
* DOCUMENT ME!
- *
- * @param g DOCUMENT ME!
+ *
+ * @param g
+ * DOCUMENT ME!
*/
public void paintComponent(Graphics g)
{
// scalewidth will normally be screenwidth,
public void drawScale(Graphics g, int startx, int endx, int width,
- int height)
+ int height)
{
Graphics2D gg = (Graphics2D) g;
gg.setFont(av.getFont());
if (av.antiAlias)
{
gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
- RenderingHints.VALUE_ANTIALIAS_ON);
+ RenderingHints.VALUE_ANTIALIAS_ON);
}
- //Fill in the background
+ // Fill in the background
gg.setColor(Color.white);
gg.fillRect(0, 0, width, height);
gg.setColor(Color.black);
- //Fill the selected columns
+ // Fill the selected columns
ColumnSelection cs = av.getColumnSelection();
- gg.setColor(new Color(220, 0, 0));
-
- for (int i = 0; i < cs.size(); i++)
+ int s;
+ if (cs != null)
{
- int sel = cs.columnAt(i);
- if (av.hasHiddenColumns)
- {
- sel = av.getColumnSelection().findColumnPosition(sel);
- }
+ gg.setColor(new Color(220, 0, 0));
- if ( (sel >= startx) && (sel <= endx))
+ for (int i = 0; i < cs.size(); i++)
{
- gg.fillRect( (sel - startx) * av.charWidth, 0, av.charWidth,
- getHeight());
+ int sel = cs.columnAt(i);
+ if (av.hasHiddenColumns())
+ {
+ if (cs.isVisible(sel))
+ {
+ sel = cs.findColumnPosition(sel);
+ }
+ else
+ {
+ continue;
+ }
+ }
+
+ if ((sel >= startx) && (sel <= endx))
+ {
+ gg.fillRect((sel - startx) * av.charWidth, 0, av.charWidth,
+ getHeight());
+ }
}
}
-
// Draw the scale numbers
gg.setColor(Color.black);
FontMetrics fm = gg.getFontMetrics(av.getFont());
int y = av.charHeight - fm.getDescent();
- if ( (scalestartx % 10) == 0)
+ if ((scalestartx % 10) == 0)
{
scalestartx += 5;
}
for (int i = scalestartx; i < endx; i += 5)
{
- if ( (i % 10) == 0)
+ if ((i % 10) == 0)
{
- string = String.valueOf(av.getColumnSelection().adjustForHiddenColumns(
- i));
- if ( (i - startx - 1) * av.charWidth > maxX)
+ string = String.valueOf(av.getColumnSelection()
+ .adjustForHiddenColumns(i));
+ if ((i - startx - 1) * av.charWidth > maxX)
{
- gg.drawString(string,
- (i - startx - 1) * av.charWidth, y);
+ gg.drawString(string, (i - startx - 1) * av.charWidth, y);
maxX = (i - startx + 1) * av.charWidth + fm.stringWidth(string);
}
- gg.drawLine( (int) ( ( (i - startx - 1) * av.charWidth) +
- (av.charWidth / 2)), y + 2,
- (int) ( ( (i - startx - 1) * av.charWidth) +
- (av.charWidth / 2)),
- y + (fm.getDescent() * 2));
+ gg.drawLine(
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + 2,
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + (fm.getDescent() * 2));
}
else
{
- gg.drawLine( (int) ( ( (i - startx - 1) * av.charWidth) +
- (av.charWidth / 2)), y + fm.getDescent(),
- (int) ( ( (i - startx - 1) * av.charWidth) +
- (av.charWidth / 2)), y + (fm.getDescent() * 2));
+ gg.drawLine(
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + fm.getDescent(),
+ (int) (((i - startx - 1) * av.charWidth) + (av.charWidth / 2)),
+ y + (fm.getDescent() * 2));
}
}
- if (av.hasHiddenColumns)
+ if (av.hasHiddenColumns())
{
gg.setColor(Color.blue);
int res;
if (av.getShowHiddenMarkers())
{
- for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size();
- i++)
+ for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
+ .size(); i++)
{
- res = av.getColumnSelection().findHiddenRegionPosition(i) -
- startx;
+ res = av.getColumnSelection().findHiddenRegionPosition(i)
+ - startx;
if (res < 0 || res > endx - scalestartx)
{
}
gg.fillPolygon(new int[]
- {res * av.charWidth - av.charHeight / 4,
- res * av.charWidth + av.charHeight / 4,
- res * av.charWidth},
- new int[]
- {
- y - av.charHeight / 2, y - av.charHeight / 2,
- y + 8
- }, 3);
+ { res * av.charWidth - av.charHeight / 4,
+ res * av.charWidth + av.charHeight / 4, res * av.charWidth },
+ new int[]
+ { y - av.charHeight / 2, y - av.charHeight / 2, y + 8 },
+ 3);
}
}
if (reveal != null && reveal[0] > startx && reveal[0] < endx)
{
- gg.drawString("Reveal Columns", reveal[0] * av.charWidth, 0);
+ gg.drawString(MessageManager.getString("label.reveal_columns"), reveal[0] * av.charWidth, 0);
}
}
git://source.jalview.org / jalview.git / blobdiff