/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
package jalview.jbgui;
import jalview.datamodel.AlignmentI;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
import jalview.io.FormatAdapter;
+import jalview.io.cache.JvCacheableInputBox;
import jalview.util.MessageManager;
import java.awt.BorderLayout;
-import java.awt.Dimension;
import java.awt.Font;
import java.awt.GridLayout;
-import java.awt.Insets;
import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.KeyAdapter;
import java.awt.event.KeyEvent;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JLabel;
import javax.swing.JPanel;
-import javax.swing.JScrollPane;
-import javax.swing.JTextArea;
import javax.swing.SwingConstants;
import javax.swing.SwingUtilities;
import javax.swing.event.CaretEvent;
public class GFinder extends JPanel
{
- JLabel jLabelFind = new JLabel();
+ private static final java.awt.Font VERDANA_12 = new Font("Verdana",
+ Font.PLAIN, 12);
- protected JButton findAll = new JButton();
+ private static final String FINDER_CACHE_KEY = "CACHE.FINDER";
- protected JButton findNext = new JButton();
+ /*
+ * if more checkboxes are wanted, increase this value
+ * and add to centrePanel in jbInit()
+ */
+ private static final int PANEL_ROWS = 4;
- JPanel actionsPanel = new JPanel();
+ protected JButton createFeatures;
- GridLayout gridLayout1 = new GridLayout();
+ protected JvCacheableInputBox<String> searchBox;
- protected JButton createNewGroup = new JButton();
+ protected JCheckBox caseSensitive;
- JScrollPane jScrollPane1 = new JScrollPane();
+ protected JCheckBox searchDescription;
- protected JTextArea textfield = new JTextArea();
-
- BorderLayout mainBorderLayout = new BorderLayout();
-
- JPanel jPanel2 = new JPanel();
-
- JPanel jPanel3 = new JPanel();
-
- JPanel jPanel4 = new JPanel();
-
- BorderLayout borderLayout2 = new BorderLayout();
-
- JPanel jPanel6 = new JPanel();
-
- protected JCheckBox caseSensitive = new JCheckBox();
-
- protected JCheckBox searchDescription = new JCheckBox();
-
- GridLayout optionsGridLayout = new GridLayout();
+ protected JCheckBox ignoreHidden;
public GFinder()
{
}
}
+ /**
+ * Constructs the widgets and adds them to the layout
+ */
private void jbInit() throws Exception
{
- jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12));
- jLabelFind.setText(MessageManager.getString("label.find"));
- this.setLayout(mainBorderLayout);
- findAll.setFont(new java.awt.Font("Verdana", 0, 12));
- findAll.setText(MessageManager.getString("action.find_all"));
- findAll.addActionListener(new java.awt.event.ActionListener()
+ /*
+ * border layout
+ * West: 4 rows
+ * first row 'Find'
+ * remaining rows empty
+ * Center: 4 rows
+ * first row search box
+ * second row 'match case' checkbox
+ * third row 'include description' checkbox
+ * fourth row 'ignore hidden' checkbox
+ * East: four rows
+ * first row 'find next' button
+ * second row 'find all' button
+ * third row 'new feature' button
+ * fourth row empty
+ */
+ this.setLayout(new BorderLayout());
+ JPanel eastPanel = new JPanel();
+ eastPanel.setLayout(new GridLayout(PANEL_ROWS, 1));
+ this.add(eastPanel, BorderLayout.EAST);
+ JPanel centrePanel = new JPanel();
+ centrePanel.setLayout(new GridLayout(PANEL_ROWS, 1));
+ this.add(centrePanel, BorderLayout.CENTER);
+ JPanel westPanel = new JPanel();
+ westPanel.setLayout(new GridLayout(PANEL_ROWS, 1));
+ this.add(westPanel, BorderLayout.WEST);
+
+ /*
+ * 'Find' prompt goes top left
+ */
+ JLabel findLabel = new JLabel(
+ " " + MessageManager.getString("label.find") + " ");
+ findLabel.setFont(VERDANA_12);
+ westPanel.add(findLabel);
+
+ /*
+ * search box
+ */
+ searchBox = new JvCacheableInputBox<>(FINDER_CACHE_KEY, 25);
+ searchBox.getComponent().setFont(VERDANA_12);
+ searchBox.addCaretListener(new CaretListener()
{
- public void actionPerformed(ActionEvent e)
+ @Override
+ public void caretUpdate(CaretEvent e)
{
- findAll_actionPerformed(e);
+ textfield_caretUpdate();
}
});
- findNext.setFont(new java.awt.Font("Verdana", 0, 12));
- findNext.setText(MessageManager.getString("action.find_next"));
- findNext.addActionListener(new java.awt.event.ActionListener()
+ searchBox.addKeyListener(new KeyAdapter()
{
- public void actionPerformed(ActionEvent e)
+ @Override
+ public void keyPressed(KeyEvent e)
{
- findNext_actionPerformed(e);
+ textfield_keyPressed(e);
}
});
- actionsPanel.setLayout(gridLayout1);
- gridLayout1.setHgap(0);
- gridLayout1.setRows(3);
- gridLayout1.setVgap(2);
- createNewGroup.setEnabled(false);
- createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));
- createNewGroup.setMargin(new Insets(0, 0, 0, 0));
- createNewGroup.setText(MessageManager.getString("label.new_feature"));
- createNewGroup.addActionListener(new java.awt.event.ActionListener()
+ centrePanel.add(searchBox.getComponent());
+
+ /*
+ * search options checkboxes
+ */
+ caseSensitive = new JCheckBox();
+ caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
+ caseSensitive.setText(MessageManager.getString("label.match_case"));
+
+ searchDescription = new JCheckBox();
+ searchDescription
+ .setText(MessageManager.getString("label.include_description"));
+
+ ignoreHidden = new JCheckBox();
+ ignoreHidden.setText(MessageManager.getString("label.ignore_hidden"));
+ ignoreHidden.setToolTipText(
+ MessageManager.getString("label.ignore_hidden_tooltip"));
+
+ centrePanel.add(caseSensitive);
+ centrePanel.add(searchDescription);
+ centrePanel.add(ignoreHidden);
+
+ /*
+ * action buttons
+ */
+ JButton findAll = new JButton(
+ MessageManager.getString("action.find_all"));
+ findAll.setFont(VERDANA_12);
+ findAll.addActionListener(new ActionListener()
{
+ @Override
public void actionPerformed(ActionEvent e)
{
- createNewGroup_actionPerformed(e);
+ findAll_actionPerformed();
}
});
- textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
- textfield.setText("");
- textfield.setLineWrap(true);
- textfield.addCaretListener(new CaretListener()
+ JButton findNext = new JButton(
+ MessageManager.getString("action.find_next"));
+ findNext.setFont(VERDANA_12);
+ findNext.addActionListener(new ActionListener()
{
- public void caretUpdate(CaretEvent e)
+ @Override
+ public void actionPerformed(ActionEvent e)
{
- textfield_caretUpdate(e);
+ findNext_actionPerformed();
}
});
- textfield.addKeyListener(new java.awt.event.KeyAdapter()
+ createFeatures = new JButton();
+ createFeatures.setEnabled(false);
+ createFeatures.setFont(VERDANA_12);
+ createFeatures.setText(MessageManager.getString("label.new_feature"));
+ createFeatures.addActionListener(new ActionListener()
{
- public void keyPressed(KeyEvent e)
+ @Override
+ public void actionPerformed(ActionEvent e)
{
- textfield_keyPressed(e);
+ createFeatures_actionPerformed();
}
});
-
- mainBorderLayout.setHgap(5);
- mainBorderLayout.setVgap(5);
- jPanel4.setLayout(borderLayout2);
- jPanel2.setPreferredSize(new Dimension(10, 1));
- jPanel3.setPreferredSize(new Dimension(10, 1));
- caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
- caseSensitive.setText(MessageManager.getString("label.match_case"));
-
- searchDescription.setText(MessageManager
- .getString("label.include_description"));
-
- actionsPanel.add(findNext, null);
- actionsPanel.add(findAll, null);
- actionsPanel.add(createNewGroup, null);
- this.add(jLabelFind, java.awt.BorderLayout.WEST);
- this.add(actionsPanel, java.awt.BorderLayout.EAST);
- this.add(jPanel2, java.awt.BorderLayout.SOUTH);
- this.add(jPanel3, java.awt.BorderLayout.NORTH);
- this.add(jPanel4, java.awt.BorderLayout.CENTER);
- jPanel4.add(jScrollPane1, java.awt.BorderLayout.NORTH);
- jScrollPane1.getViewport().add(textfield);
-
- JPanel optionsPanel = new JPanel();
-
- optionsGridLayout.setHgap(0);
- optionsGridLayout.setRows(2);
- optionsGridLayout.setVgap(2);
- optionsPanel.setLayout(optionsGridLayout);
- optionsPanel.add(caseSensitive, null);
- optionsPanel.add(searchDescription, null);
-
- jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST);
+ eastPanel.add(findNext);
+ eastPanel.add(findAll);
+ eastPanel.add(createFeatures);
}
- protected void findNext_actionPerformed(ActionEvent e)
+ protected void textfield_keyPressed(KeyEvent e)
{
+ if (e.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ if (!searchBox.isPopupVisible())
+ {
+ e.consume();
+ findNext_actionPerformed();
+ }
+ }
}
- protected void findAll_actionPerformed(ActionEvent e)
+ protected void findNext_actionPerformed()
{
}
- protected void textfield_keyPressed(KeyEvent e)
+ protected void findAll_actionPerformed()
{
- if (e.getKeyCode() == KeyEvent.VK_ENTER)
- {
- e.consume();
- findNext_actionPerformed(null);
- }
}
- public void createNewGroup_actionPerformed(ActionEvent e)
+ public void createFeatures_actionPerformed()
{
}
- public void textfield_caretUpdate(CaretEvent e)
+ public void textfield_caretUpdate()
{
- if (textfield.getText().indexOf(">") > -1)
+ // disabled as appears to be running a non-functional
+ if (false && searchBox.getUserInput().indexOf(">") > -1)
{
SwingUtilities.invokeLater(new Runnable()
{
+ @Override
public void run()
{
- String str = textfield.getText();
+ String str = searchBox.getUserInput();
AlignmentI al = null;
try
{
- al = new FormatAdapter().readFile(str, "Paste", "FASTA");
+ al = new FormatAdapter().readFile(str, DataSourceType.PASTE,
+ FileFormat.Fasta);
} catch (Exception ex)
{
}
if (al != null && al.getHeight() > 0)
{
str = jalview.analysis.AlignSeq.extractGaps(
- jalview.util.Comparison.GapChars, al.getSequenceAt(0)
- .getSequenceAsString());
-
- textfield.setText(str);
+ jalview.util.Comparison.GapChars,
+ al.getSequenceAt(0).getSequenceAsString());
+ // todo and what? set str as searchBox text?
}
}
});
}
}
+
}
git://source.jalview.org / jalview.git / blobdiff