/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package jalview.jbgui;\r
-\r
-import java.awt.*;\r
-import java.awt.event.*;\r
-\r
-import javax.swing.*;\r
-\r
-\r
-public class GPCAPanel extends JPanel {\r
- JPanel jPanel2 = new JPanel();\r
- JLabel jLabel1 = new JLabel();\r
- JLabel jLabel2 = new JLabel();\r
- JLabel jLabel3 = new JLabel();\r
- protected JComboBox xCombobox = new JComboBox();\r
- protected JComboBox yCombobox = new JComboBox();\r
- protected JComboBox zCombobox = new JComboBox();\r
- FlowLayout flowLayout1 = new FlowLayout();\r
- BorderLayout borderLayout1 = new BorderLayout();\r
-\r
- public GPCAPanel() {\r
- try {\r
- jbInit();\r
- } catch (Exception e) {\r
- e.printStackTrace();\r
- }\r
-\r
- for (int i = 1; i < 8; i++) {\r
- xCombobox.addItem("dim " + i);\r
- yCombobox.addItem("dim " + i);\r
- zCombobox.addItem("dim " + i);\r
- }\r
- }\r
-\r
- private void jbInit() throws Exception {\r
- this.setLayout(borderLayout1);\r
- jPanel2.setLayout(flowLayout1);\r
- jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));\r
- jLabel1.setText("x=");\r
- jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));\r
- jLabel2.setText("y=");\r
- jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));\r
- jLabel3.setText("z=");\r
- jPanel2.setBackground(Color.white);\r
- jPanel2.setBorder(null);\r
- zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
- zCombobox.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- zCombobox_actionPerformed(e);\r
- }\r
- });\r
- yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
- yCombobox.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- yCombobox_actionPerformed(e);\r
- }\r
- });\r
- xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));\r
- xCombobox.addActionListener(new java.awt.event.ActionListener() {\r
- public void actionPerformed(ActionEvent e) {\r
- xCombobox_actionPerformed(e);\r
- }\r
- });\r
- this.add(jPanel2, BorderLayout.SOUTH);\r
- jPanel2.add(jLabel1, null);\r
- jPanel2.add(xCombobox, null);\r
- jPanel2.add(jLabel2, null);\r
- jPanel2.add(yCombobox, null);\r
- jPanel2.add(jLabel3, null);\r
- jPanel2.add(zCombobox, null);\r
- }\r
-\r
- protected void xCombobox_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- protected void yCombobox_actionPerformed(ActionEvent e) {\r
- }\r
-\r
- protected void zCombobox_actionPerformed(ActionEvent e) {\r
- }\r
-}\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.jbgui;
+
+import jalview.util.MessageManager;
+
+import java.awt.*;
+import java.awt.event.*;
+
+import javax.swing.*;
+import javax.swing.event.*;
+
+public class GPCAPanel extends JInternalFrame
+{
+ JPanel jPanel2 = new JPanel();
+
+ JLabel jLabel1 = new JLabel();
+
+ JLabel jLabel2 = new JLabel();
+
+ JLabel jLabel3 = new JLabel();
+
+ protected JComboBox xCombobox = new JComboBox();
+
+ protected JComboBox yCombobox = new JComboBox();
+
+ protected JComboBox zCombobox = new JComboBox();
+
+ protected JButton resetButton = new JButton();
+
+ FlowLayout flowLayout1 = new FlowLayout();
+
+ BorderLayout borderLayout1 = new BorderLayout();
+
+ JMenuBar jMenuBar1 = new JMenuBar();
+
+ JMenu fileMenu = new JMenu();
+
+ JMenu saveMenu = new JMenu();
+
+ protected JMenu scoreMatrixMenu = new JMenu();
+
+ JMenuItem eps = new JMenuItem();
+
+ JMenuItem png = new JMenuItem();
+
+ JMenuItem print = new JMenuItem();
+
+ JMenuItem outputValues = new JMenuItem();
+
+ JMenuItem outputPoints = new JMenuItem();
+
+ JMenuItem outputProjPoints = new JMenuItem();
+
+ protected JMenu viewMenu = new JMenu();
+
+ protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
+
+ JMenuItem bgcolour = new JMenuItem();
+
+ JMenuItem originalSeqData = new JMenuItem();
+
+ protected JMenu associateViewsMenu = new JMenu();
+
+ protected JMenu calcSettings = new JMenu();
+
+ protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
+
+ protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
+
+ protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
+
+ protected JLabel statusBar = new JLabel();
+
+ protected GridLayout statusPanelLayout = new GridLayout();
+
+ protected JPanel statusPanel = new JPanel();
+
+ public GPCAPanel()
+ {
+ try
+ {
+ jbInit();
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+
+ for (int i = 1; i < 8; i++)
+ {
+ xCombobox.addItem("dim " + i);
+ yCombobox.addItem("dim " + i);
+ zCombobox.addItem("dim " + i);
+ }
+
+ setJMenuBar(jMenuBar1);
+ }
+
+ private void jbInit() throws Exception
+ {
+ this.getContentPane().setLayout(borderLayout1);
+ jPanel2.setLayout(flowLayout1);
+ jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
+ jLabel1.setText("x=");
+ jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
+ jLabel2.setText("y=");
+ jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
+ jLabel3.setText("z=");
+ jPanel2.setBackground(Color.white);
+ jPanel2.setBorder(null);
+ zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+ zCombobox.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ zCombobox_actionPerformed(e);
+ }
+ });
+ yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+ yCombobox.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ yCombobox_actionPerformed(e);
+ }
+ });
+ xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+ xCombobox.addActionListener(new java.awt.event.ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ xCombobox_actionPerformed(e);
+ }
+ });
+ resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
+ resetButton.setText(MessageManager.getString("action.reset"));
+ resetButton.addActionListener(new java.awt.event.ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ resetButton_actionPerformed(e);
+ }
+ });
+ fileMenu.setText(MessageManager.getString("action.file"));
+ saveMenu.setText(MessageManager.getString("action.save_as"));
+ eps.setText("EPS");
+ eps.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ eps_actionPerformed(e);
+ }
+ });
+ png.setText("PNG");
+ png.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ png_actionPerformed(e);
+ }
+ });
+ outputValues.setText(MessageManager.getString("label.output_values"));
+ outputValues.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ outputValues_actionPerformed(e);
+ }
+ });
+ outputPoints.setText(MessageManager.getString("label.output_points"));
+ outputPoints.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ outputPoints_actionPerformed(e);
+ }
+ });
+ outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
+ outputProjPoints.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ outputProjPoints_actionPerformed(e);
+ }
+ });
+ print.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ print_actionPerformed(e);
+ }
+ });
+ viewMenu.setText(MessageManager.getString("action.view"));
+ viewMenu.addMenuListener(new MenuListener()
+ {
+ public void menuSelected(MenuEvent e)
+ {
+ viewMenu_menuSelected();
+ }
+
+ public void menuDeselected(MenuEvent e)
+ {
+ }
+
+ public void menuCanceled(MenuEvent e)
+ {
+ }
+ });
+ scoreMatrixMenu.setText(MessageManager.getString("label.select_score_model"));
+ scoreMatrixMenu.addMenuListener(new MenuListener()
+ {
+ public void menuSelected(MenuEvent e)
+ {
+ scoreMatrix_menuSelected();
+ }
+
+ public void menuDeselected(MenuEvent e)
+ {
+ }
+
+ public void menuCanceled(MenuEvent e)
+ {
+ }
+ });
+ showLabels.setText(MessageManager.getString("label.show_labels"));
+ showLabels.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ showLabels_actionPerformed(e);
+ }
+ });
+ print.setText(MessageManager.getString("action.print"));
+ bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
+ bgcolour.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ bgcolour_actionPerformed(e);
+ }
+ });
+ originalSeqData.setText(MessageManager.getString("label.input_data"));
+ originalSeqData.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ originalSeqData_actionPerformed(e);
+ }
+ });
+ associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
+ calcSettings.setText(MessageManager.getString("action.change_params"));
+ nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
+ protSetting.setText(MessageManager.getString("label.protein_matrix"));
+ nuclSetting.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ nuclSetting_actionPerfomed(arg0);
+ }
+ });
+ protSetting.addActionListener(new ActionListener()
+ {
+
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ protSetting_actionPerfomed(arg0);
+ }
+ });
+ jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
+ jvVersionSetting.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent arg0)
+ {
+ jvVersionSetting_actionPerfomed(arg0);
+ }
+ });
+ calcSettings.add(jvVersionSetting);
+ calcSettings.add(nuclSetting);
+ calcSettings.add(protSetting);
+ calcSettings.add(scoreMatrixMenu);
+ statusPanel.setLayout(statusPanelLayout);
+ statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
+ // statusPanel.setBackground(Color.lightGray);
+ // statusBar.setBackground(Color.lightGray);
+ // statusPanel.add(statusBar, null);
+ JPanel panelBar = new JPanel(new BorderLayout());
+ panelBar.add(jPanel2, BorderLayout.NORTH);
+ panelBar.add(statusPanel, BorderLayout.SOUTH);
+ this.getContentPane().add(panelBar, BorderLayout.SOUTH);
+ jPanel2.add(jLabel1, null);
+ jPanel2.add(xCombobox, null);
+ jPanel2.add(jLabel2, null);
+ jPanel2.add(yCombobox, null);
+ jPanel2.add(jLabel3, null);
+ jPanel2.add(zCombobox, null);
+ jPanel2.add(resetButton, null);
+ jMenuBar1.add(fileMenu);
+ jMenuBar1.add(viewMenu);
+ jMenuBar1.add(calcSettings);
+ fileMenu.add(saveMenu);
+ fileMenu.add(outputValues);
+ fileMenu.add(print);
+ fileMenu.add(originalSeqData);
+ fileMenu.add(outputPoints);
+ fileMenu.add(outputProjPoints);
+ saveMenu.add(eps);
+ saveMenu.add(png);
+ viewMenu.add(showLabels);
+ viewMenu.add(bgcolour);
+ viewMenu.add(associateViewsMenu);
+ }
+
+ protected void scoreMatrix_menuSelected()
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void resetButton_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void protSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void outputPoints_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void outputProjPoints_actionPerformed(ActionEvent e)
+ {
+ // TODO Auto-generated method stub
+
+ }
+
+ protected void xCombobox_actionPerformed(ActionEvent e)
+ {
+ }
+
+ protected void yCombobox_actionPerformed(ActionEvent e)
+ {
+ }
+
+ protected void zCombobox_actionPerformed(ActionEvent e)
+ {
+ }
+
+ public void eps_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void png_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void outputValues_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void print_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void showLabels_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void bgcolour_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void originalSeqData_actionPerformed(ActionEvent e)
+ {
+
+ }
+
+ public void viewMenu_menuSelected()
+ {
+
+ }
+
+ protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
+ {
+ // TODO Auto-generated method stub
+
+ }
+}
git://source.jalview.org / jalview.git / blobdiff