JAL-1620 version bump and release notes

[jalview.git] / src / jalview / jbgui / GPCAPanel.java

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 1e87a36..d63fd54 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.jbgui;
@@ -53,7 +55,7 @@ public class GPCAPanel extends JInternalFrame
   JMenu fileMenu = new JMenu();
 
   JMenu saveMenu = new JMenu();
-  
+
   protected JMenu scoreMatrixMenu = new JMenu();
 
   JMenuItem eps = new JMenuItem();
@@ -192,7 +194,8 @@ public class GPCAPanel extends JInternalFrame
         outputPoints_actionPerformed(e);
       }
     });
-    outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
+    outputProjPoints.setText(MessageManager
+            .getString("label.output_transformed_points") + "...");
     outputProjPoints.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -223,7 +226,8 @@ public class GPCAPanel extends JInternalFrame
       {
       }
     });
-    scoreMatrixMenu.setText(MessageManager.getString("label.select_score_model"));
+    scoreMatrixMenu.setText(MessageManager
+            .getString("label.select_score_model"));
     scoreMatrixMenu.addMenuListener(new MenuListener()
     {
       public void menuSelected(MenuEvent e)
@@ -248,7 +252,8 @@ public class GPCAPanel extends JInternalFrame
       }
     });
     print.setText(MessageManager.getString("action.print"));
-    bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
+    bgcolour.setText(MessageManager.getString("label.background_colour")
+            + "...");
     bgcolour.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -264,9 +269,11 @@ public class GPCAPanel extends JInternalFrame
         originalSeqData_actionPerformed(e);
       }
     });
-    associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
+    associateViewsMenu.setText(MessageManager
+            .getString("label.associate_nodes_with"));
     calcSettings.setText(MessageManager.getString("action.change_params"));
-    nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
+    nuclSetting
+            .setText(MessageManager.getString("label.nucleotide_matrix"));
     protSetting.setText(MessageManager.getString("label.protein_matrix"));
     nuclSetting.addActionListener(new ActionListener()
     {
@@ -286,7 +293,8 @@ public class GPCAPanel extends JInternalFrame
         protSetting_actionPerfomed(arg0);
       }
     });
-    jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
+    jvVersionSetting.setText(MessageManager
+            .getString("label.jalview_pca_calculation"));
     jvVersionSetting.addActionListener(new ActionListener()
     {
       @Override
@@ -334,7 +342,7 @@ public class GPCAPanel extends JInternalFrame
   protected void scoreMatrix_menuSelected()
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void resetButton_actionPerformed(ActionEvent e)