-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.xml.Marshaller;\r
-import org.exolab.castor.xml.Unmarshaller;\r
-\r
-/**\r
- * Class Alcodon.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class Alcodon implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _pos1.\r
- */\r
- private long _pos1;\r
-\r
- /**\r
- * keeps track of state for field: _pos1\r
- */\r
- private boolean _has_pos1;\r
-\r
- /**\r
- * Field _pos2.\r
- */\r
- private long _pos2;\r
-\r
- /**\r
- * keeps track of state for field: _pos2\r
- */\r
- private boolean _has_pos2;\r
-\r
- /**\r
- * Field _pos3.\r
- */\r
- private long _pos3;\r
-\r
- /**\r
- * keeps track of state for field: _pos3\r
- */\r
- private boolean _has_pos3;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public Alcodon() {\r
- super();\r
- }\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- */\r
- public void deletePos1(\r
- ) {\r
- this._has_pos1= false;\r
- }\r
-\r
- /**\r
- */\r
- public void deletePos2(\r
- ) {\r
- this._has_pos2= false;\r
- }\r
-\r
- /**\r
- */\r
- public void deletePos3(\r
- ) {\r
- this._has_pos3= false;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'pos1'.\r
- * \r
- * @return the value of field 'Pos1'.\r
- */\r
- public long getPos1(\r
- ) {\r
- return this._pos1;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'pos2'.\r
- * \r
- * @return the value of field 'Pos2'.\r
- */\r
- public long getPos2(\r
- ) {\r
- return this._pos2;\r
- }\r
-\r
- /**\r
- * Returns the value of field 'pos3'.\r
- * \r
- * @return the value of field 'Pos3'.\r
- */\r
- public long getPos3(\r
- ) {\r
- return this._pos3;\r
- }\r
-\r
- /**\r
- * Method hasPos1.\r
- * \r
- * @return true if at least one Pos1 has been added\r
- */\r
- public boolean hasPos1(\r
- ) {\r
- return this._has_pos1;\r
- }\r
-\r
- /**\r
- * Method hasPos2.\r
- * \r
- * @return true if at least one Pos2 has been added\r
- */\r
- public boolean hasPos2(\r
- ) {\r
- return this._has_pos2;\r
- }\r
-\r
- /**\r
- * Method hasPos3.\r
- * \r
- * @return true if at least one Pos3 has been added\r
- */\r
- public boolean hasPos3(\r
- ) {\r
- return this._has_pos3;\r
- }\r
-\r
- /**\r
- * Method isValid.\r
- * \r
- * @return true if this object is valid according to the schema\r
- */\r
- public boolean isValid(\r
- ) {\r
- try {\r
- validate();\r
- } catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param out\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void marshal(\r
- final java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, out);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @param handler\r
- * @throws java.io.IOException if an IOException occurs during\r
- * marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- */\r
- public void marshal(\r
- final org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- Marshaller.marshal(this, handler);\r
- }\r
-\r
- /**\r
- * Sets the value of field 'pos1'.\r
- * \r
- * @param pos1 the value of field 'pos1'.\r
- */\r
- public void setPos1(\r
- final long pos1) {\r
- this._pos1 = pos1;\r
- this._has_pos1 = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'pos2'.\r
- * \r
- * @param pos2 the value of field 'pos2'.\r
- */\r
- public void setPos2(\r
- final long pos2) {\r
- this._pos2 = pos2;\r
- this._has_pos2 = true;\r
- }\r
-\r
- /**\r
- * Sets the value of field 'pos3'.\r
- * \r
- * @param pos3 the value of field 'pos3'.\r
- */\r
- public void setPos3(\r
- final long pos3) {\r
- this._pos3 = pos3;\r
- this._has_pos3 = true;\r
- }\r
-\r
- /**\r
- * Method unmarshal.\r
- * \r
- * @param reader\r
- * @throws org.exolab.castor.xml.MarshalException if object is\r
- * null or if any SAXException is thrown during marshaling\r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- * @return the unmarshaled jalview.schemabinding.version2.Alcodo\r
- */\r
- public static jalview.schemabinding.version2.Alcodon unmarshal(\r
- final java.io.Reader reader)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {\r
- return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alcodon.class, reader);\r
- }\r
-\r
- /**\r
- * \r
- * \r
- * @throws org.exolab.castor.xml.ValidationException if this\r
- * object is an invalid instance according to the schema\r
- */\r
- public void validate(\r
- )\r
- throws org.exolab.castor.xml.ValidationException {\r
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
- validator.validate(this);\r
- }\r
-\r
-}\r
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.
+ * If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ ******************************************************************************/
+/*
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Alcodon.
+ *
+ * @version $Revision$ $Date$
+ */
+public class Alcodon implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _pos1.
+ */
+ private long _pos1;
+
+ /**
+ * keeps track of state for field: _pos1
+ */
+ private boolean _has_pos1;
+
+ /**
+ * Field _pos2.
+ */
+ private long _pos2;
+
+ /**
+ * keeps track of state for field: _pos2
+ */
+ private boolean _has_pos2;
+
+ /**
+ * Field _pos3.
+ */
+ private long _pos3;
+
+ /**
+ * keeps track of state for field: _pos3
+ */
+ private boolean _has_pos3;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public Alcodon()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ */
+ public void deletePos1()
+ {
+ this._has_pos1 = false;
+ }
+
+ /**
+ */
+ public void deletePos2()
+ {
+ this._has_pos2 = false;
+ }
+
+ /**
+ */
+ public void deletePos3()
+ {
+ this._has_pos3 = false;
+ }
+
+ /**
+ * Returns the value of field 'pos1'.
+ *
+ * @return the value of field 'Pos1'.
+ */
+ public long getPos1()
+ {
+ return this._pos1;
+ }
+
+ /**
+ * Returns the value of field 'pos2'.
+ *
+ * @return the value of field 'Pos2'.
+ */
+ public long getPos2()
+ {
+ return this._pos2;
+ }
+
+ /**
+ * Returns the value of field 'pos3'.
+ *
+ * @return the value of field 'Pos3'.
+ */
+ public long getPos3()
+ {
+ return this._pos3;
+ }
+
+ /**
+ * Method hasPos1.
+ *
+ * @return true if at least one Pos1 has been added
+ */
+ public boolean hasPos1()
+ {
+ return this._has_pos1;
+ }
+
+ /**
+ * Method hasPos2.
+ *
+ * @return true if at least one Pos2 has been added
+ */
+ public boolean hasPos2()
+ {
+ return this._has_pos2;
+ }
+
+ /**
+ * Method hasPos3.
+ *
+ * @return true if at least one Pos3 has been added
+ */
+ public boolean hasPos3()
+ {
+ return this._has_pos3;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'pos1'.
+ *
+ * @param pos1
+ * the value of field 'pos1'.
+ */
+ public void setPos1(final long pos1)
+ {
+ this._pos1 = pos1;
+ this._has_pos1 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos2'.
+ *
+ * @param pos2
+ * the value of field 'pos2'.
+ */
+ public void setPos2(final long pos2)
+ {
+ this._pos2 = pos2;
+ this._has_pos2 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos3'.
+ *
+ * @param pos3
+ * the value of field 'pos3'.
+ */
+ public void setPos3(final long pos3)
+ {
+ this._pos3 = pos3;
+ this._has_pos3 = true;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Alcodo
+ */
+ public static jalview.schemabinding.version2.Alcodon unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
+ jalview.schemabinding.version2.Alcodon.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff