JAL-1620 version bump and release notes

[jalview.git] / src / jalview / schemabinding / version2 / JalviewModelSequence.java

diff --git a/src/jalview/schemabinding/version2/JalviewModelSequence.java b/src/jalview/schemabinding/version2/JalviewModelSequence.java
index 1e3095c..9328e15 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/src/jalview/schemabinding/version2/JalviewModelSequence.java
@@ -1,35 +1,31 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  
- * If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
- ******************************************************************************/
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
  */
-
 package jalview.schemabinding.version2;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
+import jalview.util.MessageManager;
+
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -315,9 +311,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-      throw new IndexOutOfBoundsException("getJGroup: Index value '"
-              + index + "' not in range [0.."
-              + (this._JGroupList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getJGroup",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._JGroupList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.schemabinding.version2.JGroup) _JGroupList.get(index);
@@ -364,8 +362,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-      throw new IndexOutOfBoundsException("getJSeq: Index value '" + index
-              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getJSeq",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._JSeqList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.schemabinding.version2.JSeq) _JSeqList.get(index);
@@ -412,8 +413,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("getTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getJgetTreeSeq",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._treeList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.schemabinding.version2.Tree) _treeList.get(index);
@@ -460,9 +464,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-      throw new IndexOutOfBoundsException("getUserColours: Index value '"
-              + index + "' not in range [0.."
-              + (this._userColoursList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getUserColours",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._userColoursList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.schemabinding.version2.UserColours) _userColoursList
@@ -510,9 +516,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-      throw new IndexOutOfBoundsException("getViewport: Index value '"
-              + index + "' not in range [0.."
-              + (this._viewportList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "getViewport",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._viewportList.size() - 1)).toString()
+          })); 
     }
 
     return (jalview.schemabinding.version2.Viewport) _viewportList
@@ -787,9 +795,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-      throw new IndexOutOfBoundsException("setJGroup: Index value '"
-              + index + "' not in range [0.."
-              + (this._JGroupList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setJGroup",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._JGroupList.size() - 1)).toString()
+        })); 
     }
 
     this._JGroupList.set(index, vJGroup);
@@ -827,8 +837,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-      throw new IndexOutOfBoundsException("setJSeq: Index value '" + index
-              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setJSeq",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._JSeqList.size() - 1)).toString()
+          })); 
     }
 
     this._JSeqList.set(index, vJSeq);
@@ -865,8 +878,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-      throw new IndexOutOfBoundsException("setTree: Index value '" + index
-              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setTree",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._treeList.size() - 1)).toString()
+        })); 
     }
 
     this._treeList.set(index, vTree);
@@ -903,9 +919,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-      throw new IndexOutOfBoundsException("setUserColours: Index value '"
-              + index + "' not in range [0.."
-              + (this._userColoursList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setUserColours",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._userColoursList.size() - 1)).toString()
+          })); 
     }
 
     this._userColoursList.set(index, vUserColours);
@@ -943,9 +961,11 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-      throw new IndexOutOfBoundsException("setViewport: Index value '"
-              + index + "' not in range [0.."
-              + (this._viewportList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "setViewport",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._viewportList.size() - 1)).toString()
+        })); 
     }
 
     this._viewportList.set(index, vViewport);