-/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
- * \r
- * This file is part of Jalview.\r
- * \r
- * Jalview is free software: you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License \r
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
- * \r
- * Jalview is distributed in the hope that it will be useful, but \r
- * WITHOUT ANY WARRANTY; without even the implied warranty \r
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
- * PURPOSE. See the GNU General Public License for more details.\r
- * \r
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
- */\r
-package jalview.schemabinding.version2.descriptors;\r
-\r
-//---------------------------------/\r
-//- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import jalview.schemabinding.version2.MapListType;\r
-\r
-/**\r
- * Class MapListTypeDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class MapListTypeDescriptor extends\r
- org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
-{\r
-\r
- // --------------------------/\r
- // - Class/Member Variables -/\r
- // --------------------------/\r
-\r
- /**\r
- * Field _elementDefinition.\r
- */\r
- private boolean _elementDefinition;\r
-\r
- /**\r
- * Field _nsPrefix.\r
- */\r
- private java.lang.String _nsPrefix;\r
-\r
- /**\r
- * Field _nsURI.\r
- */\r
- private java.lang.String _nsURI;\r
-\r
- /**\r
- * Field _xmlName.\r
- */\r
- private java.lang.String _xmlName;\r
-\r
- // ----------------/\r
- // - Constructors -/\r
- // ----------------/\r
-\r
- public MapListTypeDescriptor()\r
- {\r
- super();\r
- _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- _xmlName = "mapListType";\r
- _elementDefinition = false;\r
-\r
- // -- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- // -- initialize attribute descriptors\r
-\r
- // -- _mapFromUnit\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Long.TYPE, "_mapFromUnit", "mapFromUnit",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- MapListType target = (MapListType) object;\r
- if (!target.hasMapFromUnit())\r
- {\r
- return null;\r
- }\r
- return new java.lang.Long(target.getMapFromUnit());\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- // ignore null values for non optional primitives\r
- if (value == null)\r
- {\r
- return;\r
- }\r
-\r
- target.setMapFromUnit(((java.lang.Long) value).longValue());\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _mapFromUnit\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { // -- local scope\r
- org.exolab.castor.xml.validators.LongValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.LongValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(1L);\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _mapToUnit\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- java.lang.Long.TYPE, "_mapToUnit", "mapToUnit",\r
- org.exolab.castor.xml.NodeType.Attribute);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- MapListType target = (MapListType) object;\r
- if (!target.hasMapToUnit())\r
- {\r
- return null;\r
- }\r
- return new java.lang.Long(target.getMapToUnit());\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- // ignore null values for non optional primitives\r
- if (value == null)\r
- {\r
- return;\r
- }\r
-\r
- target.setMapToUnit(((java.lang.Long) value).longValue());\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _mapToUnit\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { // -- local scope\r
- org.exolab.castor.xml.validators.LongValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.LongValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setMinInclusive(1L);\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- initialize element descriptors\r
-\r
- // -- _mapListFromList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.MapListFrom.class,\r
- "_mapListFromList", "mapListFrom",\r
- org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- MapListType target = (MapListType) object;\r
- return target.getMapListFrom();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- target\r
- .addMapListFrom((jalview.schemabinding.version2.MapListFrom) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- target.removeAllMapListFrom();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.MapListFrom();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _mapListFromList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- // -- _mapListToList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
- jalview.schemabinding.version2.MapListTo.class,\r
- "_mapListToList", "mapListTo",\r
- org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler()\r
- {\r
- public java.lang.Object getValue(java.lang.Object object)\r
- throws IllegalStateException\r
- {\r
- MapListType target = (MapListType) object;\r
- return target.getMapListTo();\r
- }\r
-\r
- public void setValue(java.lang.Object object, java.lang.Object value)\r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- target\r
- .addMapListTo((jalview.schemabinding.version2.MapListTo) value);\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public void resetValue(Object object) throws IllegalStateException,\r
- IllegalArgumentException\r
- {\r
- try\r
- {\r
- MapListType target = (MapListType) object;\r
- target.removeAllMapListTo();\r
- } catch (java.lang.Exception ex)\r
- {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
-\r
- public java.lang.Object newInstance(java.lang.Object parent)\r
- {\r
- return new jalview.schemabinding.version2.MapListTo();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
-\r
- // -- validation code for: _mapListToList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { // -- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- }\r
-\r
- // -----------/\r
- // - Methods -/\r
- // -----------/\r
-\r
- /**\r
- * Method getAccessMode.\r
- * \r
- * @return the access mode specified for this class.\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- }\r
-\r
- /**\r
- * Method getIdentity.\r
- * \r
- * @return the identity field, null if this class has no identity.\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return super.getIdentity();\r
- }\r
-\r
- /**\r
- * Method getJavaClass.\r
- * \r
- * @return the Java class represented by this descriptor.\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.MapListType.class;\r
- }\r
-\r
- /**\r
- * Method getNameSpacePrefix.\r
- * \r
- * @return the namespace prefix to use when marshaling as XML.\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return _nsPrefix;\r
- }\r
-\r
- /**\r
- * Method getNameSpaceURI.\r
- * \r
- * @return the namespace URI used when marshaling and unmarshaling as XML.\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return _nsURI;\r
- }\r
-\r
- /**\r
- * Method getValidator.\r
- * \r
- * @return a specific validator for the class described by this\r
- * ClassDescriptor.\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- }\r
-\r
- /**\r
- * Method getXMLName.\r
- * \r
- * @return the XML Name for the Class being described.\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return _xmlName;\r
- }\r
-\r
- /**\r
- * Method isElementDefinition.\r
- * \r
- * @return true if XML schema definition of this Class is that of a global\r
- * element or element with anonymous type definition.\r
- */\r
- public boolean isElementDefinition()\r
- {\r
- return _elementDefinition;\r
- }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2.descriptors;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import jalview.schemabinding.version2.MapListType;
+
+/**
+ * Class MapListTypeDescriptor.
+ *
+ * @version $Revision$ $Date$
+ */
+public class MapListTypeDescriptor extends
+ org.exolab.castor.xml.util.XMLClassDescriptorImpl
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _elementDefinition.
+ */
+ private boolean _elementDefinition;
+
+ /**
+ * Field _nsPrefix.
+ */
+ private java.lang.String _nsPrefix;
+
+ /**
+ * Field _nsURI.
+ */
+ private java.lang.String _nsURI;
+
+ /**
+ * Field _xmlName.
+ */
+ private java.lang.String _xmlName;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public MapListTypeDescriptor()
+ {
+ super();
+ _nsURI = "www.vamsas.ac.uk/jalview/version2";
+ _xmlName = "mapListType";
+ _elementDefinition = false;
+
+ // -- set grouping compositor
+ setCompositorAsSequence();
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
+ org.exolab.castor.mapping.FieldHandler handler = null;
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;
+ // -- initialize attribute descriptors
+
+ // -- _mapFromUnit
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ java.lang.Long.TYPE, "_mapFromUnit", "mapFromUnit",
+ org.exolab.castor.xml.NodeType.Attribute);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ MapListType target = (MapListType) object;
+ if (!target.hasMapFromUnit())
+ {
+ return null;
+ }
+ return new java.lang.Long(target.getMapFromUnit());
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ // ignore null values for non optional primitives
+ if (value == null)
+ {
+ return;
+ }
+
+ target.setMapFromUnit(((java.lang.Long) value).longValue());
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return null;
+ }
+ };
+ desc.setHandler(handler);
+ desc.setRequired(true);
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _mapFromUnit
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(1);
+ { // -- local scope
+ org.exolab.castor.xml.validators.LongValidator typeValidator;
+ typeValidator = new org.exolab.castor.xml.validators.LongValidator();
+ fieldValidator.setValidator(typeValidator);
+ typeValidator.setMinInclusive(1L);
+ }
+ desc.setValidator(fieldValidator);
+ // -- _mapToUnit
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ java.lang.Long.TYPE, "_mapToUnit", "mapToUnit",
+ org.exolab.castor.xml.NodeType.Attribute);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ MapListType target = (MapListType) object;
+ if (!target.hasMapToUnit())
+ {
+ return null;
+ }
+ return new java.lang.Long(target.getMapToUnit());
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ // ignore null values for non optional primitives
+ if (value == null)
+ {
+ return;
+ }
+
+ target.setMapToUnit(((java.lang.Long) value).longValue());
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return null;
+ }
+ };
+ desc.setHandler(handler);
+ desc.setRequired(true);
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _mapToUnit
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(1);
+ { // -- local scope
+ org.exolab.castor.xml.validators.LongValidator typeValidator;
+ typeValidator = new org.exolab.castor.xml.validators.LongValidator();
+ fieldValidator.setValidator(typeValidator);
+ typeValidator.setMinInclusive(1L);
+ }
+ desc.setValidator(fieldValidator);
+ // -- initialize element descriptors
+
+ // -- _mapListFromList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ jalview.schemabinding.version2.MapListFrom.class,
+ "_mapListFromList", "mapListFrom",
+ org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ MapListType target = (MapListType) object;
+ return target.getMapListFrom();
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ target.addMapListFrom((jalview.schemabinding.version2.MapListFrom) value);
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public void resetValue(Object object) throws IllegalStateException,
+ IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ target.removeAllMapListFrom();
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return new jalview.schemabinding.version2.MapListFrom();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _mapListFromList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { // -- local scope
+ }
+ desc.setValidator(fieldValidator);
+ // -- _mapListToList
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ jalview.schemabinding.version2.MapListTo.class,
+ "_mapListToList", "mapListTo",
+ org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ MapListType target = (MapListType) object;
+ return target.getMapListTo();
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ target.addMapListTo((jalview.schemabinding.version2.MapListTo) value);
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public void resetValue(Object object) throws IllegalStateException,
+ IllegalArgumentException
+ {
+ try
+ {
+ MapListType target = (MapListType) object;
+ target.removeAllMapListTo();
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return new jalview.schemabinding.version2.MapListTo();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+ desc.setMultivalued(true);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _mapListToList
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ fieldValidator.setMinOccurs(0);
+ { // -- local scope
+ }
+ desc.setValidator(fieldValidator);
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ * Method getAccessMode.
+ *
+ * @return the access mode specified for this class.
+ */
+ public org.exolab.castor.mapping.AccessMode getAccessMode()
+ {
+ return null;
+ }
+
+ /**
+ * Method getIdentity.
+ *
+ * @return the identity field, null if this class has no identity.
+ */
+ public org.exolab.castor.mapping.FieldDescriptor getIdentity()
+ {
+ return super.getIdentity();
+ }
+
+ /**
+ * Method getJavaClass.
+ *
+ * @return the Java class represented by this descriptor.
+ */
+ public java.lang.Class getJavaClass()
+ {
+ return jalview.schemabinding.version2.MapListType.class;
+ }
+
+ /**
+ * Method getNameSpacePrefix.
+ *
+ * @return the namespace prefix to use when marshaling as XML.
+ */
+ public java.lang.String getNameSpacePrefix()
+ {
+ return _nsPrefix;
+ }
+
+ /**
+ * Method getNameSpaceURI.
+ *
+ * @return the namespace URI used when marshaling and unmarshaling as XML.
+ */
+ public java.lang.String getNameSpaceURI()
+ {
+ return _nsURI;
+ }
+
+ /**
+ * Method getValidator.
+ *
+ * @return a specific validator for the class described by this
+ * ClassDescriptor.
+ */
+ public org.exolab.castor.xml.TypeValidator getValidator()
+ {
+ return this;
+ }
+
+ /**
+ * Method getXMLName.
+ *
+ * @return the XML Name for the Class being described.
+ */
+ public java.lang.String getXMLName()
+ {
+ return _xmlName;
+ }
+
+ /**
+ * Method isElementDefinition.
+ *
+ * @return true if XML schema definition of this Class is that of a global
+ * element or element with anonymous type definition.
+ */
+ public boolean isElementDefinition()
+ {
+ return _elementDefinition;
+ }
+
+}
git://source.jalview.org / jalview.git / blobdiff