JAL-1620 version bump and release notes
[jalview.git] / src / jalview / schemabinding / version2 / descriptors / SequenceSetDescriptor.java
index ca59cf3..3fccdc9 100644 (file)
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2.descriptors;\r
-\r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import jalview.schemabinding.version2.SequenceSet;\r
-\r
-/**\r
- * Class SequenceSetDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
-    //--------------------------/\r
-\r
-    /**\r
-     * Field _elementDefinition.\r
-     */\r
-    private boolean _elementDefinition;\r
-\r
-    /**\r
-     * Field _nsPrefix.\r
-     */\r
-    private java.lang.String _nsPrefix;\r
-\r
-    /**\r
-     * Field _nsURI.\r
-     */\r
-    private java.lang.String _nsURI;\r
-\r
-    /**\r
-     * Field _xmlName.\r
-     */\r
-    private java.lang.String _xmlName;\r
-\r
-\r
-      //----------------/\r
-     //- Constructors -/\r
-    //----------------/\r
-\r
-    public SequenceSetDescriptor() {\r
-        super();\r
-        _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
-        _xmlName = "SequenceSet";\r
-        _elementDefinition = true;\r
-        \r
-        //-- set grouping compositor\r
-        setCompositorAsSequence();\r
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
-        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
-        //-- initialize attribute descriptors\r
-        \r
-        //-- _gapChar\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
-        desc.setImmutable(true);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                SequenceSet target = (SequenceSet) object;\r
-                return target.getGapChar();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.setGapChar( (java.lang.String) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return null;\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setRequired(true);\r
-        desc.setMultivalued(false);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _gapChar\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(1);\r
-        { //-- local scope\r
-            org.exolab.castor.xml.validators.StringValidator typeValidator;\r
-            typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
-            fieldValidator.setValidator(typeValidator);\r
-            typeValidator.setWhiteSpace("preserve");\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- initialize element descriptors\r
-        \r
-        //-- _sequenceList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                SequenceSet target = (SequenceSet) object;\r
-                return target.getSequence();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.removeAllSequence();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new jalview.schemabinding.version2.Sequence();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _sequenceList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _annotationList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                SequenceSet target = (SequenceSet) object;\r
-                return target.getAnnotation();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.removeAllAnnotation();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new jalview.schemabinding.version2.Annotation();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _annotationList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-        //-- _sequenceSetPropertiesList\r
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
-        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
-            public java.lang.Object getValue( java.lang.Object object ) \r
-                throws IllegalStateException\r
-            {\r
-                SequenceSet target = (SequenceSet) object;\r
-                return target.getSequenceSetProperties();\r
-            }\r
-            public void setValue( java.lang.Object object, java.lang.Object value) \r
-                throws IllegalStateException, IllegalArgumentException\r
-            {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
-                try {\r
-                    SequenceSet target = (SequenceSet) object;\r
-                    target.removeAllSequenceSetProperties();\r
-                } catch (java.lang.Exception ex) {\r
-                    throw new IllegalStateException(ex.toString());\r
-                }\r
-            }\r
-            public java.lang.Object newInstance(java.lang.Object parent) {\r
-                return new jalview.schemabinding.version2.SequenceSetProperties();\r
-            }\r
-        };\r
-        desc.setHandler(handler);\r
-        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
-        desc.setMultivalued(true);\r
-        addFieldDescriptor(desc);\r
-        \r
-        //-- validation code for: _sequenceSetPropertiesList\r
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
-        fieldValidator.setMinOccurs(0);\r
-        { //-- local scope\r
-        }\r
-        desc.setValidator(fieldValidator);\r
-    }\r
-\r
-\r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
-\r
-    /**\r
-     * Method getAccessMode.\r
-     * \r
-     * @return the access mode specified for this class.\r
-     */\r
-    public org.exolab.castor.mapping.AccessMode getAccessMode(\r
-    ) {\r
-        return null;\r
-    }\r
-\r
-    /**\r
-     * Method getIdentity.\r
-     * \r
-     * @return the identity field, null if this class has no\r
-     * identity.\r
-     */\r
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
-    ) {\r
-        return super.getIdentity();\r
-    }\r
-\r
-    /**\r
-     * Method getJavaClass.\r
-     * \r
-     * @return the Java class represented by this descriptor.\r
-     */\r
-    public java.lang.Class getJavaClass(\r
-    ) {\r
-        return jalview.schemabinding.version2.SequenceSet.class;\r
-    }\r
-\r
-    /**\r
-     * Method getNameSpacePrefix.\r
-     * \r
-     * @return the namespace prefix to use when marshaling as XML.\r
-     */\r
-    public java.lang.String getNameSpacePrefix(\r
-    ) {\r
-        return _nsPrefix;\r
-    }\r
-\r
-    /**\r
-     * Method getNameSpaceURI.\r
-     * \r
-     * @return the namespace URI used when marshaling and\r
-     * unmarshaling as XML.\r
-     */\r
-    public java.lang.String getNameSpaceURI(\r
-    ) {\r
-        return _nsURI;\r
-    }\r
-\r
-    /**\r
-     * Method getValidator.\r
-     * \r
-     * @return a specific validator for the class described by this\r
-     * ClassDescriptor.\r
-     */\r
-    public org.exolab.castor.xml.TypeValidator getValidator(\r
-    ) {\r
-        return this;\r
-    }\r
-\r
-    /**\r
-     * Method getXMLName.\r
-     * \r
-     * @return the XML Name for the Class being described.\r
-     */\r
-    public java.lang.String getXMLName(\r
-    ) {\r
-        return _xmlName;\r
-    }\r
-\r
-    /**\r
-     * Method isElementDefinition.\r
-     * \r
-     * @return true if XML schema definition of this Class is that\r
-     * of a global\r
-     * element or element with anonymous type definition.\r
-     */\r
-    public boolean isElementDefinition(\r
-    ) {\r
-        return _elementDefinition;\r
-    }\r
-\r
-}\r
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2.descriptors;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import jalview.schemabinding.version2.SequenceSet;
+
+/**
+ * Class SequenceSetDescriptor.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class SequenceSetDescriptor extends
+        org.exolab.castor.xml.util.XMLClassDescriptorImpl
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _elementDefinition.
+   */
+  private boolean _elementDefinition;
+
+  /**
+   * Field _nsPrefix.
+   */
+  private java.lang.String _nsPrefix;
+
+  /**
+   * Field _nsURI.
+   */
+  private java.lang.String _nsURI;
+
+  /**
+   * Field _xmlName.
+   */
+  private java.lang.String _xmlName;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public SequenceSetDescriptor()
+  {
+    super();
+    _nsURI = "www.vamsas.ac.uk/jalview/version2";
+    _xmlName = "SequenceSet";
+    _elementDefinition = true;
+
+    // -- set grouping compositor
+    setCompositorAsSequence();
+    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
+    org.exolab.castor.mapping.FieldHandler handler = null;
+    org.exolab.castor.xml.FieldValidator fieldValidator = null;
+    // -- initialize attribute descriptors
+
+    // -- _gapChar
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.String.class, "_gapChar", "gapChar",
+            org.exolab.castor.xml.NodeType.Attribute);
+    desc.setImmutable(true);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getGapChar();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.setGapChar((java.lang.String) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setRequired(true);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _gapChar
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(1);
+    { // -- local scope
+      org.exolab.castor.xml.validators.StringValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setWhiteSpace("preserve");
+    }
+    desc.setValidator(fieldValidator);
+    // -- _datasetId
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            java.lang.String.class, "_datasetId", "datasetId",
+            org.exolab.castor.xml.NodeType.Attribute);
+    desc.setImmutable(true);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getDatasetId();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.setDatasetId((java.lang.String) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    };
+    desc.setHandler(handler);
+    desc.setMultivalued(false);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _datasetId
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { // -- local scope
+      org.exolab.castor.xml.validators.StringValidator typeValidator;
+      typeValidator = new org.exolab.castor.xml.validators.StringValidator();
+      fieldValidator.setValidator(typeValidator);
+      typeValidator.setWhiteSpace("preserve");
+    }
+    desc.setValidator(fieldValidator);
+    // -- initialize element descriptors
+
+    // -- _sequenceList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            jalview.schemabinding.version2.Sequence.class, "_sequenceList",
+            "Sequence", org.exolab.castor.xml.NodeType.Element);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getSequence();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.addSequence((jalview.schemabinding.version2.Sequence) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public void resetValue(Object object) throws IllegalStateException,
+              IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.removeAllSequence();
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.Sequence();
+      }
+    };
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _sequenceList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { // -- local scope
+    }
+    desc.setValidator(fieldValidator);
+    // -- _annotationList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            jalview.schemabinding.version2.Annotation.class,
+            "_annotationList", "Annotation",
+            org.exolab.castor.xml.NodeType.Element);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getAnnotation();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.addAnnotation((jalview.schemabinding.version2.Annotation) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public void resetValue(Object object) throws IllegalStateException,
+              IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.removeAllAnnotation();
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.Annotation();
+      }
+    };
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _annotationList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { // -- local scope
+    }
+    desc.setValidator(fieldValidator);
+    // -- _sequenceSetPropertiesList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            jalview.schemabinding.version2.SequenceSetProperties.class,
+            "_sequenceSetPropertiesList", "sequenceSetProperties",
+            org.exolab.castor.xml.NodeType.Element);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getSequenceSetProperties();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public void resetValue(Object object) throws IllegalStateException,
+              IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.removeAllSequenceSetProperties();
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.SequenceSetProperties();
+      }
+    };
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _sequenceSetPropertiesList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { // -- local scope
+    }
+    desc.setValidator(fieldValidator);
+    // -- _alcodonFrameList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+            jalview.schemabinding.version2.AlcodonFrame.class,
+            "_alcodonFrameList", "AlcodonFrame",
+            org.exolab.castor.xml.NodeType.Element);
+    handler = new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+              throws IllegalStateException
+      {
+        SequenceSet target = (SequenceSet) object;
+        return target.getAlcodonFrame();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+              throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value);
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public void resetValue(Object object) throws IllegalStateException,
+              IllegalArgumentException
+      {
+        try
+        {
+          SequenceSet target = (SequenceSet) object;
+          target.removeAllAlcodonFrame();
+        } catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.AlcodonFrame();
+      }
+    };
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    // -- validation code for: _alcodonFrameList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { // -- local scope
+    }
+    desc.setValidator(fieldValidator);
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * Method getAccessMode.
+   * 
+   * @return the access mode specified for this class.
+   */
+  public org.exolab.castor.mapping.AccessMode getAccessMode()
+  {
+    return null;
+  }
+
+  /**
+   * Method getIdentity.
+   * 
+   * @return the identity field, null if this class has no identity.
+   */
+  public org.exolab.castor.mapping.FieldDescriptor getIdentity()
+  {
+    return super.getIdentity();
+  }
+
+  /**
+   * Method getJavaClass.
+   * 
+   * @return the Java class represented by this descriptor.
+   */
+  public java.lang.Class getJavaClass()
+  {
+    return jalview.schemabinding.version2.SequenceSet.class;
+  }
+
+  /**
+   * Method getNameSpacePrefix.
+   * 
+   * @return the namespace prefix to use when marshaling as XML.
+   */
+  public java.lang.String getNameSpacePrefix()
+  {
+    return _nsPrefix;
+  }
+
+  /**
+   * Method getNameSpaceURI.
+   * 
+   * @return the namespace URI used when marshaling and unmarshaling as XML.
+   */
+  public java.lang.String getNameSpaceURI()
+  {
+    return _nsURI;
+  }
+
+  /**
+   * Method getValidator.
+   * 
+   * @return a specific validator for the class described by this
+   *         ClassDescriptor.
+   */
+  public org.exolab.castor.xml.TypeValidator getValidator()
+  {
+    return this;
+  }
+
+  /**
+   * Method getXMLName.
+   * 
+   * @return the XML Name for the Class being described.
+   */
+  public java.lang.String getXMLName()
+  {
+    return _xmlName;
+  }
+
+  /**
+   * Method isElementDefinition.
+   * 
+   * @return true if XML schema definition of this Class is that of a global
+   *         element or element with anonymous type definition.
+   */
+  public boolean isElementDefinition()
+  {
+    return _elementDefinition;
+  }
+
+}