JAL-2360 refactoring for JalviewColourScheme enum,

[jalview.git] / src / jalview / schemes / RNAInteractionColourScheme.java

diff --git a/src/jalview/schemes/RNAInteractionColourScheme.java b/src/jalview/schemes/RNAInteractionColourScheme.java
index 491d3ea..707afd7 100644 (file)
--- a/src/jalview/schemes/RNAInteractionColourScheme.java
+++ b/src/jalview/schemes/RNAInteractionColourScheme.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -31,34 +31,17 @@ public class RNAInteractionColourScheme extends ResidueColourScheme
     super();
   }
 
-  /**
-   * DOCUMENT ME!
-   * 
-   * @param n
-   *          DOCUMENT ME!
-   * 
-   * @return DOCUMENT ME!
-   */
   @Override
   public Color findColour(char c)
   {
-    // System.out.println("called"); log.debug
+    // FIXME this is just a copy of NucleotideColourScheme
     return colors[ResidueProperties.nucleotideIndex[c]];
   }
 
-  /**
-   * DOCUMENT ME!
-   * 
-   * @param n
-   *          DOCUMENT ME!
-   * @param j
-   *          DOCUMENT ME!
-   * 
-   * @return DOCUMENT ME!
-   */
   @Override
   public Color findColour(char c, int j, SequenceI seq)
   {
+    // FIXME this is just a copy of NucleotideColourScheme
     Color currentColour;
     if ((threshold == 0) || aboveThreshold(c, j))
     {
@@ -82,4 +65,16 @@ public class RNAInteractionColourScheme extends ResidueColourScheme
 
     return currentColour;
   }
+
+  @Override
+  public boolean isNucleotideSpecific()
+  {
+    return true;
+  }
+
+  @Override
+  public String getSchemeName()
+  {
+    return "RNA Interaction type";
+  }
 }