JAL-1517 update copyright to version 2.8.2

[jalview.git] / src / jalview / schemes / ResidueColourScheme.java

diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index 943d2fa..6058e56 100755 (executable)
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -194,6 +194,11 @@ public class ResidueColourScheme implements ColourSchemeI
   {
     return conservationColouring;
   }
+  @Override
+  public void setConservationApplied(boolean conservationApplied)
+  {
+    conservationColouring = conservationApplied;
+  }
 
   public void setConservationInc(int i)
   {
@@ -306,4 +311,16 @@ public class ResidueColourScheme implements ColourSchemeI
   {
   }
 
+  @Override
+  public ColourSchemeI applyTo(AnnotatedCollectionI sg,
+          Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+  {
+    try {
+      return getClass().newInstance();
+    }
+    catch (Exception q)
+    {
+      throw new Error("Serious implementation error: cannot duplicate colourscheme "+getClass().getName(), q);
+    }
+  }
 }